Variant report

Variant	rs10781363
Chromosome Location	chr9:79080046-79080047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79078849..79081929-chr9:79083400..79086374,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10735646	0.88[ASN][1000 genomes]
rs12344941	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075200-79085200	Weak transcription	Esophagus	oesophagus
2	chr9:79075200-79087200	Weak transcription	Spleen	Spleen
3	chr9:79075400-79080400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:79075400-79086000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:79075400-79086800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:79075400-79087200	Weak transcription	Colonic Mucosa	Colon
7	chr9:79075400-79089800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:79075400-79090200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:79075400-79101000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:79075600-79080400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:79075600-79083800	Enhancers	Primary B cells from peripheral blood	blood
12	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
13	chr9:79075800-79080400	Weak transcription	Fetal Thymus	thymus
14	chr9:79075800-79080600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:79076000-79083600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:79076000-79084000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr9:79076000-79087400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:79076000-79088000	Weak transcription	NHDF-Ad	bronchial
19	chr9:79076200-79080600	Weak transcription	NHLF	lung
20	chr9:79076200-79080800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr9:79076200-79083000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:79076200-79083000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:79076400-79080400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr9:79076800-79087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:79077400-79083200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:79077600-79080400	Weak transcription	HSMM	muscle
27	chr9:79077600-79080600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:79077600-79080600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr9:79077600-79082600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:79077600-79083000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:79077600-79083400	Genic enhancers	Fetal Intestine Small	intestine
32	chr9:79077600-79092800	Weak transcription	Fetal Stomach	stomach
33	chr9:79078200-79080400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:79078400-79080400	Weak transcription	Gastric	stomach
35	chr9:79078400-79083000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr9:79078600-79080600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:79078600-79092400	Weak transcription	HMEC	breast
38	chr9:79078800-79080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:79078800-79082600	Enhancers	GM12878-XiMat	blood
40	chr9:79078800-79086800	Weak transcription	Small Intestine	intestine
41	chr9:79078800-79087000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:79079000-79080200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr9:79079200-79080800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:79079200-79081000	Enhancers	Stomach Mucosa	stomach
45	chr9:79079400-79080600	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr9:79079400-79080600	Weak transcription	Osteobl	bone
47	chr9:79079400-79081200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:79079600-79080200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:79079600-79080400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr9:79079600-79080400	Strong transcription	Muscle Satellite Cultured Cells	--

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