Variant report

Variant	rs10735970
Chromosome Location	chr12:72984819-72984820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10128837	0.82[ASN][1000 genomes]
rs10128853	0.81[ASN][1000 genomes]
rs10128854	0.81[ASN][1000 genomes]
rs10129051	0.82[ASN][1000 genomes]
rs1017987	0.84[ASN][1000 genomes]
rs1032330	0.81[ASN][1000 genomes]
rs1032331	0.81[ASN][1000 genomes]
rs1032332	0.80[ASN][1000 genomes]
rs10506656	0.81[ASN][1000 genomes]
rs10506657	0.82[ASN][1000 genomes]
rs10506658	0.82[ASN][1000 genomes]
rs10748198	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10748199	0.81[ASN][1000 genomes]
rs10748202	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784972	0.81[ASN][1000 genomes]
rs10784973	0.82[ASN][1000 genomes]
rs10784975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784978	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10784979	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10879436	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10879439	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10879444	0.80[ASN][1000 genomes]
rs10879445	0.80[ASN][1000 genomes]
rs10879446	0.81[ASN][1000 genomes]
rs10879447	0.81[ASN][1000 genomes]
rs10879451	0.84[ASN][1000 genomes]
rs10879453	0.85[ASN][1000 genomes]
rs10879459	0.80[ASN][1000 genomes]
rs10879461	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10879462	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10879464	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10879465	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10879466	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10879472	0.82[ASN][1000 genomes]
rs11179253	0.82[ASN][1000 genomes]
rs11179255	0.82[ASN][1000 genomes]
rs11179256	0.82[ASN][1000 genomes]
rs11179258	0.82[ASN][1000 genomes]
rs11179259	0.82[ASN][1000 genomes]
rs11179261	0.84[ASN][1000 genomes]
rs11179264	0.85[ASN][1000 genomes]
rs11179267	0.84[ASN][1000 genomes]
rs11179280	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11832310	0.84[ASN][1000 genomes]
rs11833556	0.85[ASN][1000 genomes]
rs11834716	0.84[ASN][1000 genomes]
rs11836997	0.84[ASN][1000 genomes]
rs1214894	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1214897	0.86[EUR][1000 genomes]
rs1214899	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12296996	0.82[ASN][1000 genomes]
rs12297086	0.82[ASN][1000 genomes]
rs12297782	0.82[ASN][1000 genomes]
rs12298218	0.85[ASN][1000 genomes]
rs12298495	0.84[ASN][1000 genomes]
rs12298959	0.80[ASN][1000 genomes]
rs12302064	0.82[ASN][1000 genomes]
rs12302437	0.84[ASN][1000 genomes]
rs12302523	0.82[ASN][1000 genomes]
rs12304007	0.82[ASN][1000 genomes]
rs12304367	0.82[ASN][1000 genomes]
rs12310334	0.82[ASN][1000 genomes]
rs12310446	0.82[ASN][1000 genomes]
rs12310724	0.82[ASN][1000 genomes]
rs12322419	0.82[ASN][1000 genomes]
rs12581283	0.84[ASN][1000 genomes]
rs12816288	0.85[ASN][1000 genomes]
rs12824763	0.84[ASN][1000 genomes]
rs12824967	0.84[ASN][1000 genomes]
rs1347194	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1347196	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1353160	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1389497	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1444606	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1444607	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1463756	0.81[ASN][1000 genomes]
rs1687265	0.81[EUR][1000 genomes]
rs17111389	0.81[ASN][1000 genomes]
rs17111470	0.82[ASN][1000 genomes]
rs1817885	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1826590	0.80[ASN][1000 genomes]
rs1836042	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1836043	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1836044	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1844642	0.80[ASN][1000 genomes]
rs1864837	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1864838	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1873347	0.84[ASN][1000 genomes]
rs1907087	0.82[ASN][1000 genomes]
rs1908180	0.80[ASN][1000 genomes]
rs1962706	0.83[ASN][1000 genomes]
rs1965318	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1968964	0.81[ASN][1000 genomes]
rs1968965	0.80[ASN][1000 genomes]
rs1991751	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2272503	0.82[ASN][1000 genomes]
rs2272504	0.81[ASN][1000 genomes]
rs2272505	0.81[ASN][1000 genomes]
rs2272506	0.80[ASN][1000 genomes]
rs2272507	0.81[ASN][1000 genomes]
rs2367746	0.83[ASN][1000 genomes]
rs2367747	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2367748	0.84[ASN][1000 genomes]
rs2367750	0.80[ASN][1000 genomes]
rs2887071	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs305396	0.82[ASN][1000 genomes]
rs305402	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs305403	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3782366	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3782367	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3782368	0.82[ASN][1000 genomes]
rs3817611	0.80[ASN][1000 genomes]
rs3817612	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3843025	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3852549	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3852550	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3858591	0.81[ASN][1000 genomes]
rs3910234	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4100196	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4144975	0.84[ASN][1000 genomes]
rs460406	0.82[ASN][1000 genomes]
rs57810138	0.82[ASN][1000 genomes]
rs58509346	0.80[ASN][1000 genomes]
rs58687032	0.80[ASN][1000 genomes]
rs6582090	0.88[EUR][1000 genomes]
rs6582093	0.81[ASN][1000 genomes]
rs6582094	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6582095	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68011183	0.82[ASN][1000 genomes]
rs7131984	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7135547	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7139104	0.80[ASN][1000 genomes]
rs71457035	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs723867	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7296349	0.84[ASN][1000 genomes]
rs7296979	0.81[ASN][1000 genomes]
rs7298834	0.84[ASN][1000 genomes]
rs7299984	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7308678	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7309263	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7309651	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7315299	0.84[ASN][1000 genomes]
rs7315407	0.84[ASN][1000 genomes]
rs7955512	0.80[ASN][1000 genomes]
rs7955675	0.80[ASN][1000 genomes]
rs7964031	0.80[ASN][1000 genomes]
rs7967001	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7969680	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7969934	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7970163	0.80[ASN][1000 genomes]
rs7976677	0.80[ASN][1000 genomes]
rs963407	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs996575	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422452	chr12:72485933-73175581	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv899257	chr12:72569746-73145896	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1044083	chr12:72647640-73275526	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv469465	chr12:72655925-73259114	Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv559363	chr12:72655925-73259114	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv868884	chr12:72664763-73241518	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv817280	chr12:72820558-73508605	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv899259	chr12:72885554-73011367	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv832454	chr12:72940798-73081180	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1805187	chr12:72949787-73013475	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72964400-72986800	Weak transcription	Fetal Intestine Large	intestine

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