Variant report

Variant	rs2272507
Chromosome Location	chr12:72955901-72955902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10128837	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10128853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129051	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1017987	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1032330	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032332	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10506656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506657	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10506658	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10735970	0.81[ASN][1000 genomes]
rs10748199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748202	0.81[ASN][1000 genomes]
rs10784971	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784973	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784975	0.81[ASN][1000 genomes]
rs10879444	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10879445	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10879446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10879447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10879451	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10879453	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10879458	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10879459	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10879460	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11179226	0.84[EUR][1000 genomes]
rs11179228	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11179230	0.82[EUR][1000 genomes]
rs11179240	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11179253	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11179255	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11179256	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11179258	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11179259	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11179261	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11179264	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11179267	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11179289	0.80[ASN][1000 genomes]
rs11179290	0.80[ASN][1000 genomes]
rs11613768	0.80[ASN][1000 genomes]
rs11832310	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11832989	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11833556	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11834716	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11836997	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12099552	0.80[ASN][1000 genomes]
rs12296996	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12297086	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12297782	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12298218	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12298495	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12298959	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12302064	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12302437	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12302523	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12304007	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12304367	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12310334	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12310446	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12310724	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12322419	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12581283	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12816288	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12824763	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12824967	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1387978	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1463755	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1463756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560742	0.80[ASN][1000 genomes]
rs1560743	0.80[ASN][1000 genomes]
rs17111389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111470	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1826590	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1826591	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1844642	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1873347	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1873348	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1899907	0.81[EUR][1000 genomes]
rs1907087	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1908180	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1962706	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1965318	0.86[ASN][1000 genomes]
rs1968964	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1968965	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2272503	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2272504	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2272505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272506	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2367746	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2367748	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2367750	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2367751	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3782368	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817611	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817612	0.85[ASN][1000 genomes]
rs3858591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41387445	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4144975	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57810138	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58509346	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58687032	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6582093	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66495167	0.80[ASN][1000 genomes]
rs68011183	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7137054	0.86[EUR][1000 genomes]
rs7139104	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295506	0.86[EUR][1000 genomes]
rs7295898	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7296349	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7296979	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298834	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7307975	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7310174	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7311155	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7311350	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7315299	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7315407	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7955512	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7955675	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7955871	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7964031	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7967001	0.85[ASN][1000 genomes]
rs7970163	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7976677	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs963407	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422452	chr12:72485933-73175581	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv899257	chr12:72569746-73145896	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv899258	chr12:72624088-72957899	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1044083	chr12:72647640-73275526	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv469465	chr12:72655925-73259114	Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv559363	chr12:72655925-73259114	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv868884	chr12:72664763-73241518	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv832453	chr12:72778058-72966827	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv817280	chr12:72820558-73508605	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv899259	chr12:72885554-73011367	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv899260	chr12:72914831-72977526	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv832454	chr12:72940798-73081180	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv1805187	chr12:72949787-73013475	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv559365	chr12:72955245-72966727	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72941600-72959800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:72947600-72973600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links