Variant report

Variant	rs10736078
Chromosome Location	chr10:95508142-95508143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:95501274..95503967-chr10:95507239..95509314,2	MCF-7	breast:
2	chr10:95507841..95511578-chr10:95514882..95519880,7	MCF-7	breast:
3	chr10:95505485..95509321-chr10:95520774..95525210,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108231	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10786136	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882326	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919484	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919491	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs873920	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs913047	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs946553	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10736078	FRA10AC1	cis	Adipose Subcutaneous	GTEx
rs10736078	C10orf4	Cis_1M	lymphoblastoid	RTeQTL
rs10736078	FRA10AC1	cis	Muscle Skeletal	GTEx
rs10736078	FRA10AC1	cis	Artery Tibial	GTEx
rs10736078	FRA10AC1	cis	Nerve Tibial	GTEx
rs10736078	FRA10AC1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95501800-95508800	Weak transcription	Right Atrium	heart
2	chr10:95503000-95511600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:95505000-95509000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:95505400-95508200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:95505400-95508800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:95505400-95511600	Weak transcription	Liver	Liver
7	chr10:95505600-95509200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:95505800-95508200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:95505800-95517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:95506000-95508400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:95506400-95509400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:95506400-95509600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:95506600-95511800	Weak transcription	Stomach Mucosa	stomach
14	chr10:95506800-95508600	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:95506800-95508600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:95506800-95508600	Weak transcription	Small Intestine	intestine
17	chr10:95506800-95508600	Weak transcription	NHLF	lung
18	chr10:95506800-95508800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:95506800-95509000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:95506800-95509000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:95506800-95510200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:95506800-95511800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:95507000-95508200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:95507000-95508200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:95507000-95508400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:95507000-95508400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:95507000-95508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:95507000-95508400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:95507000-95508400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:95507000-95508400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:95507000-95508400	Weak transcription	Brain Anterior Caudate	brain
32	chr10:95507000-95508400	Weak transcription	Fetal Intestine Large	intestine
33	chr10:95507000-95508400	Weak transcription	Fetal Stomach	stomach
34	chr10:95507000-95508600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:95507000-95508600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:95507000-95508800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:95507000-95508800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:95507000-95508800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:95507000-95509000	Weak transcription	Adipose Nuclei	Adipose
40	chr10:95507000-95509000	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:95507000-95510800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:95507000-95511000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:95507000-95511000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:95507000-95511600	Weak transcription	Brain Substantia Nigra	brain
45	chr10:95507000-95511600	Weak transcription	A549	lung
46	chr10:95507200-95508200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:95507200-95508200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:95507200-95508200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:95507200-95508200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:95507200-95508400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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