Variant report

Variant	rs913047
Chromosome Location	chr10:95511003-95511004
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95507841..95511578-chr10:95514882..95519880,7	MCF-7	breast:
2	chr10:95510815..95514212-chr10:95521474..95524274,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108231	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10736078	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786136	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882326	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919484	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4919491	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs873920	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs946553	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs913047	FRA10AC1	cis	Nerve Tibial	GTEx
rs913047	FRA10AC1	cis	Muscle Skeletal	GTEx
rs913047	FRA10AC1	cis	Adipose Subcutaneous	GTEx
rs913047	FRA10AC1	cis	Artery Tibial	GTEx
rs913047	C10orf4	Cis_1M	lymphoblastoid	RTeQTL
rs913047	FRA10AC1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95503000-95511600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:95505400-95511600	Weak transcription	Liver	Liver
3	chr10:95505800-95517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:95506600-95511800	Weak transcription	Stomach Mucosa	stomach
5	chr10:95506800-95511800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:95507000-95511600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:95507000-95511600	Weak transcription	A549	lung
8	chr10:95507200-95511800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:95507600-95511800	Weak transcription	HSMMtube	muscle
10	chr10:95507800-95511800	Weak transcription	NH-A	brain
11	chr10:95508200-95512800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:95508200-95515000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:95508400-95511800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:95508400-95512200	Enhancers	Fetal Intestine Large	intestine
15	chr10:95508400-95512200	Enhancers	Fetal Intestine Small	intestine
16	chr10:95509200-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:95509200-95514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:95509400-95511200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:95509400-95511200	Weak transcription	Brain Anterior Caudate	brain
20	chr10:95509400-95511200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:95509400-95511200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:95509400-95511400	Weak transcription	Brain Angular Gyrus	brain
23	chr10:95509400-95511600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:95509400-95511800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:95509400-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:95509400-95511800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:95509400-95511800	Weak transcription	Right Atrium	heart
28	chr10:95509400-95512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:95509600-95511600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:95509600-95511600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:95509600-95511600	Weak transcription	Fetal Stomach	stomach
32	chr10:95509600-95511600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:95509600-95511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:95509600-95511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:95509600-95511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr10:95509600-95511800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:95509600-95511800	Weak transcription	NHDF-Ad	bronchial
38	chr10:95509600-95511800	Weak transcription	Osteobl	bone
39	chr10:95509600-95512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:95509600-95514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:95509800-95511400	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:95509800-95511600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:95509800-95512200	Weak transcription	NHLF	lung
44	chr10:95509800-95514000	Weak transcription	Small Intestine	intestine
45	chr10:95510200-95512000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr10:95510200-95517600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:95510400-95512000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr10:95510400-95512600	Enhancers	Placenta	Placenta
49	chr10:95510600-95511600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:95510600-95512000	Enhancers	H9 Cell Line	embryonic stem cell

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