Variant report

Variant	rs10738168
Chromosome Location	chr9:10580326-10580327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10809111	0.87[GIH][hapmap];1.00[JPT][hapmap]
rs10809130	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs10809131	1.00[JPT][hapmap]
rs10959147	1.00[JPT][hapmap]
rs10959149	0.86[CHB][hapmap]
rs10959154	1.00[JPT][hapmap]
rs12335709	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1322279	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1322280	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs1322281	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap]
rs1322282	0.84[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs1322305	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1322307	1.00[JPT][hapmap]
rs1322309	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1407399	0.82[YRI][hapmap]
rs17792357	1.00[JPT][hapmap]
rs2475432	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs7862929	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs833413	1.00[JPT][hapmap]
rs833414	1.00[JPT][hapmap]
rs9298660	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs988954	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021630	chr9:10336415-10881683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831507	chr9:10439463-10676779	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1023764	chr9:10504157-10685587	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539997	chr9:10504157-10685587	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv34558	chr9:10512307-10581500	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2757313	chr9:10512307-10586527	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2759667	chr9:10512307-10586527	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv892322	chr9:10538336-10582246	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
11	nsv442134	chr9:10541175-10583273	Weak transcription Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
12	nsv1032936	chr9:10541177-10633543	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv34992	chr9:10546257-10586527	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
14	nsv466165	chr9:10546779-10592492	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
15	nsv466166	chr9:10546779-10592492	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
16	nsv613391	chr9:10546779-10592492	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
17	nsv438092	chr9:10546814-10582586	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
18	nsv892324	chr9:10546814-10602787	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv613392	chr9:10547403-10595208	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv437084	chr9:10559329-10590179	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10738168	C9orf150	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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