Variant report

Variant	rs1322305
Chromosome Location	chr9:10552604-10552605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10738168	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10809111	1.00[JPT][hapmap]
rs10809130	1.00[JPT][hapmap]
rs10809131	1.00[JPT][hapmap]
rs10959147	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs10959154	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10959156	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12335709	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs1322279	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs1322280	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs1322281	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1322282	1.00[JPT][hapmap]
rs1322307	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1322309	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17792357	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2475432	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7862929	1.00[JPT][hapmap]
rs833413	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs833414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9298660	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs988954	0.89[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021630	chr9:10336415-10881683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv892316	chr9:10348091-10555358	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv466161	chr9:10365060-10557349	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv613378	chr9:10365060-10557349	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv831507	chr9:10439463-10676779	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1023764	chr9:10504157-10685587	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv539997	chr9:10504157-10685587	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv892320	chr9:10510683-10555039	Enhancers Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv34558	chr9:10512307-10581500	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv2757313	chr9:10512307-10586527	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2759667	chr9:10512307-10586527	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv892321	chr9:10518177-10555039	Enhancers ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv613390	chr9:10538067-10557349	Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
16	nsv892322	chr9:10538336-10582246	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
17	nsv442134	chr9:10541175-10583273	Weak transcription Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
18	nsv1032936	chr9:10541177-10633543	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1026647	chr9:10541916-10565964	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
20	nsv892323	chr9:10543899-10565574	Enhancers Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
21	esv34992	chr9:10546257-10586527	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
22	nsv466165	chr9:10546779-10592492	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
23	nsv466166	chr9:10546779-10592492	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
24	nsv613391	chr9:10546779-10592492	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
25	nsv438092	chr9:10546814-10582586	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
26	nsv892324	chr9:10546814-10602787	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv613392	chr9:10547403-10595208	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv437083	chr9:10547886-10558102	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
29	nsv892325	chr9:10551203-10560924	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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