Variant report

Variant	rs10739972
Chromosome Location	chr9:96975173-96975174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10125839	0.84[AMR][1000 genomes]
rs11792471	0.90[AMR][1000 genomes]
rs1421134	1.00[CEU][hapmap];0.95[GIH][hapmap];0.89[MEX][hapmap];0.85[EUR][1000 genomes]
rs2026618	0.82[CEU][hapmap];0.95[GIH][hapmap]
rs2675279	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2717489	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.99[ASN][1000 genomes]
rs4744322	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7025880	0.85[EUR][1000 genomes]
rs7045890	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7046438	0.96[AMR][1000 genomes]
rs7865735	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9299415	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
4	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96973000-96975400	Enhancers	Placenta	Placenta
2	chr9:96974000-96975600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:96974000-96975600	Weak transcription	HMEC	breast
4	chr9:96974200-96975400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:96974200-96975600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:96974200-96976000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:96974400-96975400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:96974400-96975400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:96974400-96976200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:96974400-96976400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:96974400-96976600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:96974600-96975200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:96974600-96975400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:96974600-96975400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:96975000-96975400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr9:96975000-96976000	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links