Variant report

Variant	rs7865735
Chromosome Location	chr9:96953503-96953504
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10125839	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10739972	1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11792471	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1421134	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833404	0.98[ASN][1000 genomes]
rs2026618	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2675279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2717489	0.85[CEU][hapmap];0.95[GIH][hapmap]
rs4744322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7025880	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7046438	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299415	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96931400-96965600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:96937200-96959400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:96939800-96960800	Weak transcription	NHDF-Ad	bronchial
4	chr9:96940400-96955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:96941400-96959400	Weak transcription	Spleen	Spleen
6	chr9:96942400-96957600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:96942400-96964000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:96944400-96959400	Weak transcription	Psoas Muscle	Psoas
9	chr9:96945000-96955000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:96945200-96955200	Weak transcription	Fetal Heart	heart
11	chr9:96946200-96957000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:96946200-96959400	Weak transcription	Aorta	Aorta
13	chr9:96946200-96962800	Weak transcription	Gastric	stomach
14	chr9:96946200-96965000	Weak transcription	NHLF	lung
15	chr9:96946600-96954000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:96946800-96955200	Weak transcription	HSMMtube	muscle
17	chr9:96946800-96955400	Weak transcription	NH-A	brain
18	chr9:96946800-96957200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:96946800-96957800	Weak transcription	Primary T cells from cord blood	blood
20	chr9:96946800-96965400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:96947000-96955200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:96947000-96957400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:96947000-96959400	Weak transcription	Left Ventricle	heart
24	chr9:96947000-96959800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:96947000-96966200	Weak transcription	Fetal Kidney	kidney
26	chr9:96947200-96959200	Weak transcription	NHEK	skin
27	chr9:96949400-96960200	Weak transcription	Placenta	Placenta
28	chr9:96949800-96957000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:96950000-96955200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:96950000-96955200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:96950000-96955200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:96950000-96955200	Weak transcription	Osteobl	bone
33	chr9:96951000-96954800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:96951200-96953800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:96951200-96954200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:96951200-96954400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:96951200-96954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:96951200-96956800	Weak transcription	HSMM	muscle
39	chr9:96953200-96954000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:96953200-96954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:96953400-96954000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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