Variant report

Variant	rs1833404
Chromosome Location	chr9:96932592-96932593
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96771017..96773474-chr9:96932074..96933586,2	MCF-7	breast:
2	chr9:96913449..96915470-chr9:96932041..96933932,2	MCF-7	breast:
3	chr9:96829354..96831525-chr9:96932462..96934545,2	K562	blood:
4	chr9:96931258..96933517-chr9:97020161..97023083,3	K562	blood:
5	chr9:96827846..96829961-chr9:96932041..96934679,2	MCF-7	breast:
6	chr9:96845064..96846581-chr9:96932043..96934956,2	K562	blood:

Variant related genes	Relation type
ENSG00000175787	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10125839	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11792471	0.97[ASN][1000 genomes]
rs1421134	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2026618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675279	1.00[ASN][1000 genomes]
rs2717489	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744322	1.00[ASN][1000 genomes]
rs7025880	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7045890	1.00[ASN][1000 genomes]
rs7046438	0.98[ASN][1000 genomes]
rs7848170	0.81[EUR][1000 genomes]
rs7865735	0.98[ASN][1000 genomes]
rs9299415	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3435412	chr9:96924949-96935312	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96927800-96932600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr9:96927800-96932600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:96927800-96932800	Active TSS	Aorta	Aorta
4	chr9:96927800-96933200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:96928000-96932600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:96928000-96932800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:96928000-96932800	Active TSS	Psoas Muscle	Psoas
8	chr9:96928200-96932800	Active TSS	Right Ventricle	heart
9	chr9:96928200-96932800	Active TSS	HMEC	breast
10	chr9:96929400-96932800	Active TSS	Right Atrium	heart
11	chr9:96929600-96933400	Weak transcription	Spleen	Spleen
12	chr9:96929600-96936400	Weak transcription	Gastric	stomach
13	chr9:96929600-96938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:96929800-96933400	Weak transcription	Lung	lung
15	chr9:96929800-96933400	Weak transcription	Pancreas	Pancrea
16	chr9:96929800-96936000	Weak transcription	Esophagus	oesophagus
17	chr9:96929800-96944800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:96929800-96948400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:96930000-96932800	Flanking Active TSS	HUVEC	blood vessel
20	chr9:96930000-96933000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:96930000-96933600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:96930000-96936200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:96930200-96932600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr9:96930200-96933800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:96930400-96933400	Weak transcription	Small Intestine	intestine
26	chr9:96930400-96935400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr9:96930400-96938200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr9:96930600-96932600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr9:96930600-96933800	Enhancers	Primary T cells from cord blood	blood
30	chr9:96930600-96934800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr9:96930600-96935400	Weak transcription	Fetal Thymus	thymus
32	chr9:96930600-96935600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr9:96930600-96935800	Weak transcription	Placenta	Placenta
34	chr9:96930600-96937600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:96930600-96943600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:96930600-96943800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr9:96930800-96932600	Flanking Active TSS	NHEK	skin
38	chr9:96930800-96933400	Weak transcription	Colonic Mucosa	Colon
39	chr9:96930800-96933600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:96931000-96932600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
41	chr9:96931000-96932600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr9:96931000-96933400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:96931000-96934600	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr9:96931000-96935400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr9:96931000-96935400	Enhancers	Colon Smooth Muscle	Colon
46	chr9:96931000-96936000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr9:96931000-96937200	Enhancers	Fetal Heart	heart
48	chr9:96931200-96932600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr9:96931200-96932800	Enhancers	Fetal Kidney	kidney
50	chr9:96931200-96932800	Active TSS	NHLF	lung

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