Variant report

Variant	rs7848170
Chromosome Location	chr9:96911376-96911377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96829876..96832396-chr9:96910876..96912523,2	MCF-7	breast:
2	chr9:96911236..96913938-chr9:96926952..96928493,2	MCF-7	breast:
3	chr9:96900996..96905420-chr9:96905582..96911723,7	K562	blood:
4	chr9:96909142..96911762-chr9:96912280..96913850,2	K562	blood:
5	chr9:96911035..96912883-chr9:96918874..96920896,2	MCF-7	breast:
6	chr9:96909599..96912003-chr9:96928176..96929680,2	K562	blood:
7	chr9:96909256..96912834-chr9:96914432..96917620,5	K562	blood:
8	chr9:96904365..96907195-chr9:96908218..96912337,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1152754	0.89[EUR][1000 genomes]
rs1833404	0.81[EUR][1000 genomes]
rs2026618	0.81[EUR][1000 genomes]
rs3898527	0.90[EUR][1000 genomes]
rs9299415	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96903000-96912000	Weak transcription	HepG2	liver
2	chr9:96904000-96912800	Weak transcription	NH-A	brain
3	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
4	chr9:96904400-96912600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:96904600-96913200	Weak transcription	Adipose Nuclei	Adipose
6	chr9:96904800-96912000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:96904800-96912000	Weak transcription	Spleen	Spleen
8	chr9:96907200-96912200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:96907400-96913200	Weak transcription	Lung	lung
10	chr9:96909400-96913000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:96910200-96913400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:96910200-96914000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:96910200-96914200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:96910400-96913600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:96910600-96912600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:96910600-96913400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:96910600-96913400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:96910600-96913600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:96910600-96913600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:96910600-96914000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr9:96910800-96913400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr9:96911000-96912000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:96911200-96911400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr9:96911200-96911600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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