Variant report

Variant	rs10740543
Chromosome Location	chr10:54985331-54985332
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10762949	0.99[ASN][1000 genomes]
rs10762950	0.99[ASN][1000 genomes]
rs10762951	0.99[ASN][1000 genomes]
rs10762952	0.99[ASN][1000 genomes]
rs10762953	0.97[ASN][1000 genomes]
rs10762954	0.97[ASN][1000 genomes]
rs10762955	1.00[EUR][1000 genomes]
rs10824945	0.82[EUR][1000 genomes]
rs11003449	0.93[EUR][1000 genomes]
rs11003450	0.83[EUR][1000 genomes]
rs11003462	0.98[EUR][1000 genomes]
rs11003466	0.99[ASN][1000 genomes]
rs11003467	0.99[ASN][1000 genomes]
rs11003471	0.97[ASN][1000 genomes]
rs11592690	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12412557	0.99[EUR][1000 genomes]
rs1903933	0.99[ASN][1000 genomes]
rs2384154	0.84[EUR][1000 genomes]
rs7091768	0.99[ASN][1000 genomes]
rs7897385	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv515785	chr10:54981512-55093531	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54983400-54985600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:54983400-54985600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:54983600-54985600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:54984200-54985400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:54984400-54985600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:54985200-54985400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:54985200-54985600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:54985200-55005200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links