Variant report

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10500843	1.00[CHB][hapmap]
rs11025056	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12222160	1.00[ASN][1000 genomes]
rs12273001	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12276811	1.00[ASN][1000 genomes]
rs12792654	0.92[ASN][1000 genomes]
rs1346117	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1648233	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2288251	0.80[JPT][hapmap]
rs7936229	1.00[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10741762	GAS2	cis	parietal	SCAN
rs10741762	SLC17A6	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19219200-19223600	Active TSS	Right Atrium	heart
2	chr11:19219800-19223600	Active TSS	Left Ventricle	heart
3	chr11:19219800-19223600	Active TSS	Right Ventricle	heart
4	chr11:19219800-19224200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:19220800-19226000	Weak transcription	Small Intestine	intestine
6	chr11:19221200-19223200	Enhancers	HSMMtube	muscle
7	chr11:19221400-19223800	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr11:19221400-19224000	Enhancers	NH-A	brain
9	chr11:19221800-19224000	Enhancers	Hela-S3	cervix
10	chr11:19222000-19224000	Enhancers	NHDF-Ad	bronchial
11	chr11:19222200-19223600	ZNF genes & repeats	Fetal Heart	heart
12	chr11:19222400-19223600	Active TSS	Fetal Muscle Trunk	muscle
13	chr11:19222400-19224200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:19222600-19223400	Active TSS	Fetal Muscle Leg	muscle
15	chr11:19222600-19223400	Bivalent Enhancer	Osteobl	bone
16	chr11:19222600-19223600	Weak transcription	Fetal Lung	lung
17	chr11:19222600-19223800	Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr11:19222600-19224000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:19222600-19224200	Enhancers	HSMM	muscle
20	chr11:19222600-19224600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:19222600-19231000	Weak transcription	Gastric	stomach
22	chr11:19222800-19223200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:19222800-19223400	Active TSS	Psoas Muscle	Psoas

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