Variant report

Variant	rs12276811
Chromosome Location	chr11:19221755-19221756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10741762	1.00[ASN][1000 genomes]
rs11025056	1.00[ASN][1000 genomes]
rs12222160	1.00[ASN][1000 genomes]
rs12273001	0.81[ASN][1000 genomes]
rs12792654	0.92[ASN][1000 genomes]
rs1346117	1.00[ASN][1000 genomes]
rs1648233	1.00[ASN][1000 genomes]
rs7936229	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19218800-19221800	Weak transcription	Hela-S3	cervix
2	chr11:19219200-19223600	Active TSS	Right Atrium	heart
3	chr11:19219800-19223600	Active TSS	Left Ventricle	heart
4	chr11:19219800-19223600	Active TSS	Right Ventricle	heart
5	chr11:19219800-19224200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:19220000-19222000	Active TSS	Fetal Muscle Leg	muscle
7	chr11:19220000-19222600	Enhancers	Fetal Intestine Small	intestine
8	chr11:19220400-19222600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:19220600-19222200	Active TSS	Fetal Heart	heart
10	chr11:19220600-19222600	Enhancers	Fetal Intestine Large	intestine
11	chr11:19220600-19222600	Enhancers	Stomach Mucosa	stomach
12	chr11:19220600-19222800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:19220600-19222800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:19220800-19222000	Weak transcription	Gastric	stomach
15	chr11:19220800-19222000	Weak transcription	Psoas Muscle	Psoas
16	chr11:19220800-19223000	Enhancers	Primary hematopoietic stem cells	blood
17	chr11:19220800-19226000	Weak transcription	Small Intestine	intestine
18	chr11:19221000-19222000	Active TSS	Fetal Muscle Trunk	muscle
19	chr11:19221200-19222400	Enhancers	HSMM	muscle
20	chr11:19221200-19222600	Enhancers	Fetal Lung	lung
21	chr11:19221200-19222800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:19221200-19223200	Enhancers	HSMMtube	muscle
23	chr11:19221400-19222000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:19221400-19222400	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:19221400-19223800	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr11:19221400-19224000	Enhancers	NH-A	brain
27	chr11:19221600-19222000	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr11:19221600-19222000	Flanking Active TSS	HUVEC	blood vessel
29	chr11:19221600-19222200	Enhancers	Osteobl	bone
30	chr11:19221600-19222400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:19221600-19222600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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