Variant report

Variant	rs10743092
Chromosome Location	chr11:8837387-8837388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8711214..8713494-chr11:8834662..8837467,3	K562	blood:
2	chr11:8707625..8713219-chr11:8836057..8840145,5	K562	blood:
3	chr11:8835358..8837463-chr11:8838521..8841389,2	MCF-7	breast:
4	chr11:8708964..8711177-chr11:8835969..8837619,2	MCF-7	breast:
5	chr11:8708066..8711768-chr11:8837087..8840258,4	MCF-7	breast:
6	chr11:8707625..8711209-chr11:8836057..8839950,3	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10769962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769963	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7111092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs978637	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv527073	chr11:8829168-8848463	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8832600-8840800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:8832800-8837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:8833000-8837400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:8833000-8837600	Enhancers	NHLF	lung
5	chr11:8833000-8839200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:8833200-8837400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:8833200-8837400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:8833200-8837400	Enhancers	NHEK	skin
9	chr11:8833200-8837800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:8833200-8859800	Weak transcription	Aorta	Aorta
11	chr11:8833800-8837400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:8834200-8837400	Enhancers	Placenta	Placenta
13	chr11:8834200-8838600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:8834200-8839000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:8834400-8837400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:8834600-8837400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:8834800-8837400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:8834800-8837400	Enhancers	Dnd41	blood
19	chr11:8834800-8838200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:8835000-8837400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:8835200-8837800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:8835400-8837600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:8835600-8840000	Weak transcription	Colonic Mucosa	Colon
24	chr11:8835600-8845000	Weak transcription	Psoas Muscle	Psoas
25	chr11:8835600-8848800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:8835800-8840600	Weak transcription	Fetal Stomach	stomach
27	chr11:8836200-8843000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:8836200-8843600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:8836200-8844000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:8836200-8844200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr11:8836200-8848000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:8836400-8837400	Enhancers	HSMM	muscle
33	chr11:8836400-8844000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:8836400-8847600	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:8836400-8849800	Weak transcription	Fetal Intestine Small	intestine
36	chr11:8836600-8838800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:8836600-8839800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:8836600-8850400	Weak transcription	Fetal Lung	lung
39	chr11:8836800-8838800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:8836800-8840000	Weak transcription	Ovary	ovary
41	chr11:8836800-8847600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:8836800-8848600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:8837000-8837800	Enhancers	Hela-S3	cervix
44	chr11:8837000-8850000	Weak transcription	Lung	lung
45	chr11:8837200-8843800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:8837200-8847000	Weak transcription	HSMMtube	muscle
47	chr11:8837200-8847200	Weak transcription	NHDF-Ad	bronchial
48	chr11:8837200-8847600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:8837200-8847600	Weak transcription	Fetal Kidney	kidney
50	chr11:8837200-8848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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