Variant report

Variant	rs10743658
Chromosome Location	chr12:29538846-29538847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29534214..29536521-chr12:29538492..29540922,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10082956	0.82[AFR][1000 genomes]
rs10128781	0.82[AFR][1000 genomes]
rs1035606	0.82[AFR][1000 genomes]
rs10743657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10843390	0.82[AFR][1000 genomes]
rs10843391	0.80[AFR][1000 genomes]
rs10843397	0.86[AFR][1000 genomes]
rs10843398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10843403	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10843407	0.80[ASN][1000 genomes]
rs11050203	0.83[AFR][1000 genomes]
rs11050209	0.83[AFR][1000 genomes]
rs1156242	0.82[AFR][1000 genomes]
rs12228468	0.90[ASN][1000 genomes]
rs12831751	0.82[AFR][1000 genomes]
rs1989478	0.90[ASN][1000 genomes]
rs2194515	0.80[ASN][1000 genomes]
rs2278093	0.84[AFR][1000 genomes]
rs2278094	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782513	0.83[AFR][1000 genomes]
rs3847678	0.80[ASN][1000 genomes]
rs4931177	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4931178	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6487804	0.83[ASN][1000 genomes]
rs6487813	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6487815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487818	0.81[ASN][1000 genomes]
rs7297435	0.83[AFR][1000 genomes]
rs7302557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311742	0.83[AFR][1000 genomes]
rs7315504	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651802	0.82[AFR][1000 genomes]
rs966540	0.83[AFR][1000 genomes]
rs996498	0.83[AFR][1000 genomes]
rs9989017	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29535600-29542600	Weak transcription	Hela-S3	cervix
2	chr12:29535600-29543400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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