Variant report

Variant	rs10843403
Chromosome Location	chr12:29540309-29540310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29534214..29536521-chr12:29538492..29540922,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10082956	0.83[AFR][1000 genomes]
rs10128781	0.83[AFR][1000 genomes]
rs1035604	0.81[JPT][hapmap]
rs1035606	0.83[AFR][1000 genomes]
rs10743657	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10743658	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10843366	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs10843367	0.84[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10843371	0.83[ASN][1000 genomes]
rs10843377	0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10843382	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs10843384	0.84[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs10843390	0.83[AFR][1000 genomes]
rs10843391	0.81[AFR][1000 genomes]
rs10843397	0.85[AFR][1000 genomes]
rs10843398	0.81[CEU][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11050161	0.82[ASN][1000 genomes]
rs11050162	0.82[ASN][1000 genomes]
rs11050167	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs11050170	0.82[ASN][1000 genomes]
rs11050173	0.80[ASN][1000 genomes]
rs11050181	0.82[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs11050187	0.90[ASN][1000 genomes]
rs11050188	0.88[ASN][1000 genomes]
rs11050189	0.91[ASN][1000 genomes]
rs11050191	0.88[ASN][1000 genomes]
rs11050192	0.90[ASN][1000 genomes]
rs11050193	0.86[ASN][1000 genomes]
rs11050194	0.86[ASN][1000 genomes]
rs11050203	0.82[AFR][1000 genomes]
rs11050208	1.00[ASN][1000 genomes]
rs11050209	0.82[AFR][1000 genomes]
rs1156242	0.83[AFR][1000 genomes]
rs12231498	0.88[ASN][1000 genomes]
rs12366505	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs12366527	0.91[ASN][1000 genomes]
rs12831751	0.83[AFR][1000 genomes]
rs16934135	0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs2042511	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs2194518	0.84[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2194519	0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2278093	0.85[AFR][1000 genomes]
rs2278094	0.81[CEU][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3764953	0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs3782506	0.84[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs3782509	0.84[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs3782511	0.84[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs3782513	0.82[AFR][1000 genomes]
rs4331146	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs4931177	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4931178	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57803026	0.95[ASN][1000 genomes]
rs6487796	0.83[ASN][1000 genomes]
rs6487805	0.84[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs6487808	0.84[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs6487815	0.82[CEU][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67146951	0.86[ASN][1000 genomes]
rs67517901	0.83[ASN][1000 genomes]
rs7294598	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs7297435	0.82[AFR][1000 genomes]
rs7301188	0.82[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs7301398	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7302129	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs7302557	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7308125	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7311742	0.83[AFR][1000 genomes]
rs7311912	0.89[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs7312164	0.91[ASN][1000 genomes]
rs7315504	0.82[CEU][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7954278	0.87[ASN][1000 genomes]
rs7954871	0.84[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7957339	0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs7973786	0.90[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs7976961	0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs9651802	0.83[AFR][1000 genomes]
rs966540	0.82[AFR][1000 genomes]
rs9738721	0.91[ASN][1000 genomes]
rs996498	0.82[AFR][1000 genomes]
rs9989017	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10843403	RP11-996F15.2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29535600-29542600	Weak transcription	Hela-S3	cervix
2	chr12:29535600-29543400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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