Variant report

Variant	rs10743777
Chromosome Location	chr12:32265372-32265373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:32265314-32266339	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:32258139..32262130-chr12:32264296..32270162,5	K562	blood:
2	chr12:32254333..32256394-chr12:32262873..32265545,2	K562	blood:
3	chr12:32264689..32269066-chr12:32271365..32275666,5	K562	blood:
4	chr12:32258502..32261631-chr12:32261998..32266748,8	K562	blood:

Variant related genes	Relation type
ENSG00000257530	TF binding region
ENSG00000257530	Chromatin interaction
ENSG00000151746	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10844128	0.84[ASN][1000 genomes]
rs10844131	0.82[EUR][1000 genomes]
rs1144720	0.81[AFR][1000 genomes]
rs3871520	0.82[EUR][1000 genomes]
rs7970965	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898969	chr12:32224948-32375677	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1042317	chr12:32228872-32316774	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1041733	chr12:32247427-32312547	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32260400-32267200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:32261000-32268600	Weak transcription	Spleen	Spleen
3	chr12:32261200-32268400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:32261200-32268400	Weak transcription	Left Ventricle	heart
5	chr12:32261200-32271200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:32261200-32277600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:32261200-32277600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:32261400-32268600	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:32261400-32273800	Weak transcription	Fetal Thymus	thymus
10	chr12:32262000-32268400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:32262000-32268600	Weak transcription	Adipose Nuclei	Adipose
12	chr12:32262200-32265600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:32262200-32268000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:32262200-32268400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:32262200-32268400	Weak transcription	Aorta	Aorta
16	chr12:32262200-32268400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr12:32262200-32268400	Weak transcription	Colon Smooth Muscle	Colon
18	chr12:32262200-32268400	Weak transcription	Fetal Heart	heart
19	chr12:32262200-32268400	Weak transcription	Fetal Stomach	stomach
20	chr12:32262200-32268400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr12:32262200-32268400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:32262200-32271600	Weak transcription	Fetal Intestine Small	intestine
23	chr12:32262200-32273200	Weak transcription	Small Intestine	intestine
24	chr12:32262200-32275600	Weak transcription	Thymus	Thymus
25	chr12:32262400-32267800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:32262400-32267800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:32262400-32268400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr12:32262400-32268400	Weak transcription	Right Atrium	heart
29	chr12:32262400-32268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr12:32262400-32287400	Weak transcription	Primary T cells from cord blood	blood
31	chr12:32262400-32290200	Weak transcription	Primary B cells from cord blood	blood
32	chr12:32263200-32267800	Weak transcription	HUVEC	blood vessel
33	chr12:32263200-32268400	Weak transcription	Brain Substantia Nigra	brain
34	chr12:32263200-32268600	Weak transcription	Brain Hippocampus Middle	brain
35	chr12:32263200-32274000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr12:32263200-32287000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr12:32263400-32268400	Weak transcription	GM12878-XiMat	blood
38	chr12:32263600-32265400	Weak transcription	HMEC	breast
39	chr12:32263600-32265600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr12:32263600-32266000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:32263600-32267600	Weak transcription	NHLF	lung
42	chr12:32263600-32267800	Weak transcription	NHEK	skin
43	chr12:32263600-32268600	Weak transcription	Brain Germinal Matrix	brain
44	chr12:32263600-32273200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr12:32263800-32268400	Weak transcription	Brain Anterior Caudate	brain
46	chr12:32264200-32265400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr12:32264200-32265600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr12:32264200-32266000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr12:32264200-32266000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:32264200-32266800	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links