Variant report

Variant	rs7970965
Chromosome Location	chr12:32264479-32264480
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:32258139..32262130-chr12:32264296..32270162,5	K562	blood:
2	chr12:32254333..32256394-chr12:32262873..32265545,2	K562	blood:
3	chr12:32258502..32261631-chr12:32261998..32266748,8	K562	blood:

Variant related genes	Relation type
ENSG00000151746	Chromatin interaction
ENSG00000257530	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10743777	0.84[ASN][1000 genomes]
rs10844119	0.82[ASN][1000 genomes]
rs10844127	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051803	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12229634	0.90[ASN][1000 genomes]
rs12230264	0.90[ASN][1000 genomes]
rs1260709	0.81[AFR][1000 genomes]
rs3803118	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898969	chr12:32224948-32375677	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1042317	chr12:32228872-32316774	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1041733	chr12:32247427-32312547	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32260400-32267200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:32261000-32268600	Weak transcription	Spleen	Spleen
3	chr12:32261200-32264600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:32261200-32268400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:32261200-32268400	Weak transcription	Left Ventricle	heart
6	chr12:32261200-32271200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:32261200-32277600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:32261200-32277600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:32261400-32268600	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:32261400-32273800	Weak transcription	Fetal Thymus	thymus
11	chr12:32262000-32268400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:32262000-32268600	Weak transcription	Adipose Nuclei	Adipose
13	chr12:32262200-32265600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr12:32262200-32268000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:32262200-32268400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr12:32262200-32268400	Weak transcription	Aorta	Aorta
17	chr12:32262200-32268400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:32262200-32268400	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:32262200-32268400	Weak transcription	Fetal Heart	heart
20	chr12:32262200-32268400	Weak transcription	Fetal Stomach	stomach
21	chr12:32262200-32268400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr12:32262200-32268400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr12:32262200-32271600	Weak transcription	Fetal Intestine Small	intestine
24	chr12:32262200-32273200	Weak transcription	Small Intestine	intestine
25	chr12:32262200-32275600	Weak transcription	Thymus	Thymus
26	chr12:32262400-32264600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:32262400-32264600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:32262400-32265000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:32262400-32267800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:32262400-32267800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr12:32262400-32268400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr12:32262400-32268400	Weak transcription	Right Atrium	heart
33	chr12:32262400-32268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr12:32262400-32287400	Weak transcription	Primary T cells from cord blood	blood
35	chr12:32262400-32290200	Weak transcription	Primary B cells from cord blood	blood
36	chr12:32263200-32267800	Weak transcription	HUVEC	blood vessel
37	chr12:32263200-32268400	Weak transcription	Brain Substantia Nigra	brain
38	chr12:32263200-32268600	Weak transcription	Brain Hippocampus Middle	brain
39	chr12:32263200-32274000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr12:32263200-32287000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr12:32263400-32264800	Enhancers	Brain Cingulate Gyrus	brain
42	chr12:32263400-32265200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr12:32263400-32268400	Weak transcription	GM12878-XiMat	blood
44	chr12:32263600-32264800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr12:32263600-32264800	Active TSS	Fetal Brain Female	brain
46	chr12:32263600-32265000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:32263600-32265000	Weak transcription	HSMMtube	muscle
48	chr12:32263600-32265400	Weak transcription	HMEC	breast
49	chr12:32263600-32265600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr12:32263600-32266000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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