Variant report

Variant	rs10744760
Chromosome Location	chr12:121767459-121767460
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121766904..121769207-chr12:121783043..121785599,3	K562	blood:
2	chr12:121765884..121767945-chr12:121769635..121773990,4	K562	blood:
3	chr12:121765501..121767742-chr12:121774547..121776610,2	K562	blood:
4	chr12:121766824..121769041-chr12:121774189..121777102,2	MCF-7	breast:
5	chr12:121765402..121768051-chr12:121774253..121778314,4	K562	blood:
6	chr12:121766782..121769460-chr12:121788559..121790508,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10744759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774591	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089886	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4980985	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4980993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133933	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963796	0.83[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121744200-121783400	Weak transcription	Stomach Mucosa	stomach
2	chr12:121751200-121785600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:121751400-121785800	Strong transcription	Fetal Thymus	thymus
4	chr12:121752000-121785800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:121752000-121787000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:121752400-121776000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr12:121753200-121786000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:121753400-121786000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:121753800-121775600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:121754000-121767800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:121754000-121768200	Strong transcription	Liver	Liver
12	chr12:121754000-121769000	Strong transcription	Fetal Intestine Large	intestine
13	chr12:121754000-121770400	Strong transcription	Primary T cells from cord blood	blood
14	chr12:121754000-121776000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr12:121754000-121785600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr12:121754000-121785800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:121754000-121786000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:121754400-121776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:121754600-121772400	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr12:121754800-121769000	Strong transcription	Fetal Intestine Small	intestine
21	chr12:121754800-121772400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr12:121754800-121775600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr12:121754800-121784800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:121754800-121784800	Strong transcription	Fetal Stomach	stomach
25	chr12:121755600-121772000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:121757000-121768200	Weak transcription	Small Intestine	intestine
27	chr12:121757400-121772400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr12:121757800-121776200	Strong transcription	Thymus	Thymus
29	chr12:121758000-121768000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:121758200-121772200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr12:121759800-121786400	Strong transcription	Dnd41	blood
32	chr12:121760200-121775600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:121760200-121776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:121760200-121785800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr12:121760200-121786000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr12:121760400-121769400	Strong transcription	Gastric	stomach
37	chr12:121760400-121772400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr12:121760400-121773200	Strong transcription	GM12878-XiMat	blood
39	chr12:121760400-121776400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr12:121760600-121772000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr12:121760600-121776000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr12:121760600-121784400	Strong transcription	Left Ventricle	heart
43	chr12:121760800-121775600	Strong transcription	Placenta	Placenta
44	chr12:121760800-121775600	Strong transcription	K562	blood
45	chr12:121760800-121785400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:121761000-121772600	Strong transcription	Adipose Nuclei	Adipose
47	chr12:121761000-121772600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr12:121761000-121775400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr12:121761000-121775800	Strong transcription	HepG2	liver
50	chr12:121761000-121776200	Strong transcription	Primary B cells from cord blood	blood

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