Variant report

Variant	rs7963796
Chromosome Location	chr12:121777552-121777553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121776698..121778273-chr12:121788618..121791145,2	MCF-7	breast:
2	chr12:121765402..121768051-chr12:121774253..121778314,4	K562	blood:
3	chr12:121772068..121774414-chr12:121776079..121778435,2	MCF-7	breast:
4	chr12:121733172..121735800-chr12:121776997..121779778,2	K562	blood:

Variant related genes	Relation type
ENSG00000110931	Chromatin interaction
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10744759	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10744760	0.83[EUR][1000 genomes]
rs10774591	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2089886	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4980985	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4980993	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7133933	0.83[EUR][1000 genomes]
rs73405752	0.85[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121744200-121783400	Weak transcription	Stomach Mucosa	stomach
2	chr12:121751200-121785600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:121751400-121785800	Strong transcription	Fetal Thymus	thymus
4	chr12:121752000-121785800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:121752000-121787000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:121753200-121786000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:121753400-121786000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:121754000-121785600	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:121754000-121785800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:121754000-121786000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:121754800-121784800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:121754800-121784800	Strong transcription	Fetal Stomach	stomach
13	chr12:121759800-121786400	Strong transcription	Dnd41	blood
14	chr12:121760200-121785800	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:121760200-121786000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr12:121760600-121784400	Strong transcription	Left Ventricle	heart
17	chr12:121760800-121785400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:121761400-121785200	Strong transcription	Osteobl	bone
19	chr12:121762800-121785600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr12:121764200-121785400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:121764400-121786200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr12:121765000-121785600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:121765800-121781000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr12:121766400-121785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr12:121766600-121783800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:121766600-121785400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:121766600-121785400	Strong transcription	Fetal Muscle Leg	muscle
28	chr12:121766600-121785800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:121768000-121787000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:121769000-121788800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr12:121769200-121782800	Weak transcription	Fetal Heart	heart
32	chr12:121769400-121785600	Strong transcription	Liver	Liver
33	chr12:121769800-121782400	Strong transcription	Fetal Intestine Large	intestine
34	chr12:121770000-121779400	Weak transcription	Aorta	Aorta
35	chr12:121770000-121781200	Strong transcription	Fetal Intestine Small	intestine
36	chr12:121770200-121781600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr12:121771800-121778000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr12:121772200-121779200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr12:121772200-121781200	Weak transcription	Right Ventricle	heart
40	chr12:121772400-121778800	Weak transcription	NHDF-Ad	bronchial
41	chr12:121772400-121781400	Weak transcription	Fetal Brain Male	brain
42	chr12:121772600-121779200	Weak transcription	NH-A	brain
43	chr12:121772600-121781400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr12:121772600-121781600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr12:121772600-121789400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr12:121772800-121779400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr12:121772800-121779800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr12:121772800-121785600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr12:121772800-121786000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr12:121773600-121778400	Weak transcription	Lung	lung

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