Variant report

Variant	rs10745273
Chromosome Location	chr10:49665677-49665678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49657927..49660401-chr10:49664471..49666357,2	MCF-7	breast:
2	chr10:49613029..49615967-chr10:49663530..49666398,2	K562	blood:
3	chr10:49663675..49666041-chr10:49714852..49717938,4	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11101327	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17010496	0.81[EUR][1000 genomes]
rs4838592	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61838722	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838723	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838726	0.81[EUR][1000 genomes]
rs61838728	0.81[EUR][1000 genomes]
rs61838730	0.81[EUR][1000 genomes]
rs61838731	0.81[EUR][1000 genomes]
rs61838735	0.81[EUR][1000 genomes]
rs7092959	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49652000-49673000	Weak transcription	HMEC	breast
2	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
5	chr10:49661200-49669200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:49661400-49667600	Weak transcription	HSMM	muscle
7	chr10:49661800-49665800	Enhancers	Fetal Heart	heart
8	chr10:49661800-49666800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:49661800-49668600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:49662000-49667400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:49662200-49671800	Weak transcription	Aorta	Aorta
12	chr10:49662400-49672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:49662600-49667400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:49662600-49671800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:49662800-49666600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:49663000-49665800	Bivalent Enhancer	Fetal Stomach	stomach
17	chr10:49663200-49668000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:49663400-49666400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:49663400-49667800	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:49663400-49668000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:49663600-49666600	Enhancers	Fetal Thymus	thymus
22	chr10:49663800-49665800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr10:49664000-49665800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:49664000-49665800	Enhancers	Brain Hippocampus Middle	brain
25	chr10:49664000-49665800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:49664200-49665800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:49664200-49665800	Enhancers	Brain Substantia Nigra	brain
28	chr10:49664400-49665800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:49664400-49665800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr10:49664400-49666200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:49664400-49666400	Enhancers	Brain Cingulate Gyrus	brain
32	chr10:49664600-49665800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr10:49664600-49666600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:49664800-49666000	Enhancers	K562	blood
35	chr10:49664800-49667200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:49664800-49669600	Weak transcription	Osteobl	bone
37	chr10:49664800-49671200	Weak transcription	Right Ventricle	heart
38	chr10:49664800-49671400	Weak transcription	Adipose Nuclei	Adipose
39	chr10:49664800-49671400	Weak transcription	NHDF-Ad	bronchial
40	chr10:49665200-49671600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:49665200-49673400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:49665400-49665800	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr10:49665400-49667200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:49665400-49670800	Weak transcription	Ovary	ovary
45	chr10:49665400-49671200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:49665400-49671200	Weak transcription	Brain Angular Gyrus	brain
47	chr10:49665400-49672200	Weak transcription	Spleen	Spleen
48	chr10:49665400-49675000	Weak transcription	HUVEC	blood vessel
49	chr10:49665600-49665800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
50	chr10:49665600-49666000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links