Variant report

Variant	rs11101327
Chromosome Location	chr10:49662884-49662885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr10:49662122-49662909	MCF-7	breast:	n/a	n/a
2	GATA3	chr10:49662232-49662905	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49649966..49652141-chr10:49661563..49663221,2	K562	blood:

Variant related genes	Relation type
ARHGAP22	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10745273	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3855904	0.82[EUR][1000 genomes]
rs4838592	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838722	0.85[EUR][1000 genomes]
rs61838723	0.85[EUR][1000 genomes]
rs7092959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
2	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:49624600-49664800	Weak transcription	Gastric	stomach
5	chr10:49626600-49664400	Weak transcription	Spleen	Spleen
6	chr10:49644200-49664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:49647800-49663000	Weak transcription	NHEK	skin
8	chr10:49647800-49664400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:49648000-49664400	Weak transcription	Right Atrium	heart
10	chr10:49650600-49664000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:49652000-49673000	Weak transcription	HMEC	breast
12	chr10:49652600-49664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:49653200-49663600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:49653600-49664400	Weak transcription	Esophagus	oesophagus
16	chr10:49653600-49664600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:49657800-49664400	Strong transcription	NHLF	lung
19	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
20	chr10:49658000-49664400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:49658200-49663400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:49658200-49664200	Weak transcription	Adipose Nuclei	Adipose
23	chr10:49658200-49664200	Weak transcription	HUVEC	blood vessel
24	chr10:49658200-49664400	Weak transcription	Right Ventricle	heart
25	chr10:49658600-49664400	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr10:49659200-49664000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:49660400-49665400	Enhancers	Ovary	ovary
28	chr10:49660600-49663400	Enhancers	Pancreas	Pancrea
29	chr10:49660800-49663000	Enhancers	Placenta	Placenta
30	chr10:49660800-49664200	Weak transcription	Brain Substantia Nigra	brain
31	chr10:49661200-49663600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:49661200-49664400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:49661200-49669200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:49661400-49667600	Weak transcription	HSMM	muscle
35	chr10:49661600-49663200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:49661600-49664000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:49661600-49665600	Enhancers	Fetal Lung	lung
38	chr10:49661800-49664400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr10:49661800-49664400	Weak transcription	NHDF-Ad	bronchial
40	chr10:49661800-49665800	Enhancers	Fetal Heart	heart
41	chr10:49661800-49666800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:49661800-49668600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:49662000-49664000	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:49662000-49664200	Weak transcription	Brain Anterior Caudate	brain
45	chr10:49662000-49667400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:49662200-49663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:49662200-49663000	Enhancers	Fetal Muscle Trunk	muscle
48	chr10:49662200-49663200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:49662200-49663400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:49662200-49664400	Weak transcription	NH-A	brain

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