Variant report

Variant	rs10746354
Chromosome Location	chr12:86160978-86160979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10506920	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10735486	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10779208	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10779210	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11609351	0.85[EUR][1000 genomes]
rs11610371	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11610627	0.82[EUR][1000 genomes]
rs11610789	0.82[EUR][1000 genomes]
rs11611968	0.82[EUR][1000 genomes]
rs11613070	0.82[EUR][1000 genomes]
rs11614513	0.82[EUR][1000 genomes]
rs12426417	0.87[EUR][1000 genomes]
rs17279133	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17279240	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17279261	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17279289	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17279338	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17279464	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17279916	0.82[EUR][1000 genomes]
rs17344834	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17345272	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17345299	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17345522	0.82[EUR][1000 genomes]
rs2061686	0.82[EUR][1000 genomes]
rs2405623	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34656916	0.87[EUR][1000 genomes]
rs34885805	0.87[EUR][1000 genomes]
rs4897823	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4897831	0.82[EUR][1000 genomes]
rs4897834	0.82[EUR][1000 genomes]
rs56291271	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58742237	0.84[EUR][1000 genomes]
rs59858864	0.84[EUR][1000 genomes]
rs61930035	0.86[EUR][1000 genomes]
rs61930037	0.87[EUR][1000 genomes]
rs61930577	0.86[EUR][1000 genomes]
rs61930579	0.87[EUR][1000 genomes]
rs61930580	0.85[EUR][1000 genomes]
rs61930581	0.86[EUR][1000 genomes]
rs61930582	0.86[EUR][1000 genomes]
rs61930585	0.89[EUR][1000 genomes]
rs61930586	0.87[EUR][1000 genomes]
rs61930587	0.89[EUR][1000 genomes]
rs61930588	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61930590	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61930624	0.82[EUR][1000 genomes]
rs61930626	0.82[EUR][1000 genomes]
rs61930632	0.82[EUR][1000 genomes]
rs6539921	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7954472	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7959372	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7968059	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7976647	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1052187	chr12:85954455-86278200	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv541560	chr12:85954455-86278200	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1054475	chr12:85985510-86175711	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541561	chr12:85985510-86175711	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86159400-86168200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:86159800-86164400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:86160600-86169200	Weak transcription	Hela-S3	cervix

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