Variant report
Variant | rs2405623 |
---|---|
Chromosome Location | chr12:86153466-86153467 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10506918 | 1.00[CHB][hapmap] |
rs10506920 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10506923 | 0.82[EUR][1000 genomes] |
rs10735486 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10746353 | 0.82[EUR][1000 genomes] |
rs10746354 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs10779201 | 0.80[EUR][1000 genomes] |
rs10779206 | 0.82[EUR][1000 genomes] |
rs10779207 | 0.82[EUR][1000 genomes] |
rs10779208 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10779210 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10863071 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10863077 | 0.82[EUR][1000 genomes] |
rs10863078 | 0.82[EUR][1000 genomes] |
rs10863079 | 0.82[EUR][1000 genomes] |
rs10863080 | 0.82[EUR][1000 genomes] |
rs11117016 | 0.81[EUR][1000 genomes] |
rs11117017 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs11117020 | 0.81[EUR][1000 genomes] |
rs11117021 | 0.81[EUR][1000 genomes] |
rs11117023 | 0.82[EUR][1000 genomes] |
rs11117051 | 1.00[CHB][hapmap] |
rs11117052 | 1.00[CHB][hapmap] |
rs11609351 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11610371 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11610627 | 0.87[EUR][1000 genomes] |
rs11610789 | 0.87[EUR][1000 genomes] |
rs11611968 | 0.87[EUR][1000 genomes] |
rs11613070 | 0.87[EUR][1000 genomes] |
rs11614513 | 0.87[EUR][1000 genomes] |
rs11615953 | 1.00[CHB][hapmap] |
rs11833148 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs12297441 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs12308839 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs12313658 | 1.00[CHB][hapmap] |
rs12426417 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1349060 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs1349061 | 1.00[CHB][hapmap] |
rs1349063 | 1.00[CHB][hapmap] |
rs1448098 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs17279133 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs17279240 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17279261 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17279289 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17279338 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17279464 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17279916 | 0.87[EUR][1000 genomes] |
rs17280216 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs17280483 | 1.00[CHB][hapmap] |
rs17280643 | 1.00[CHB][hapmap] |
rs17344834 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17345272 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17345299 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17345522 | 0.87[EUR][1000 genomes] |
rs17345849 | 1.00[CHB][hapmap] |
rs17345975 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs1900700 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2061686 | 0.87[EUR][1000 genomes] |
rs2197769 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs2405613 | 0.81[EUR][1000 genomes] |
rs2405615 | 0.81[EUR][1000 genomes] |
rs2405621 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs34656916 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs34885805 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4131243 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs4278581 | 0.82[EUR][1000 genomes] |
rs4341613 | 0.81[EUR][1000 genomes] |
rs4412812 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs4436622 | 0.82[JPT][hapmap] |
rs4462416 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs4559760 | 0.82[EUR][1000 genomes] |
rs4897818 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs4897823 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4897831 | 0.87[EUR][1000 genomes] |
rs4897834 | 0.87[EUR][1000 genomes] |
rs4919771 | 1.00[CHB][hapmap] |
rs56291271 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs56330110 | 0.83[EUR][1000 genomes] |
rs58742237 | 0.86[EUR][1000 genomes] |
rs59858864 | 0.86[EUR][1000 genomes] |
rs61930035 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs61930037 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs61930577 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs61930579 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs61930580 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs61930581 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs61930582 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs61930585 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs61930586 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs61930587 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs61930588 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs61930590 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs61930624 | 0.87[EUR][1000 genomes] |
rs61930626 | 0.87[EUR][1000 genomes] |
rs61930632 | 0.87[EUR][1000 genomes] |
rs61930640 | 0.82[EUR][1000 genomes] |
rs6539919 | 0.82[EUR][1000 genomes] |
rs6539921 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7137041 | 0.82[EUR][1000 genomes] |
rs7307617 | 0.82[EUR][1000 genomes] |
rs7307626 | 0.82[EUR][1000 genomes] |
rs7314668 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7397266 | 1.00[CHB][hapmap] |
rs7954472 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7959372 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7968059 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7976647 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs974816 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs974818 | 0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1054573 | chr12:85658602-86235433 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1035600 | chr12:85661373-86235433 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1052187 | chr12:85954455-86278200 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv541560 | chr12:85954455-86278200 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv1054475 | chr12:85985510-86175711 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv541561 | chr12:85985510-86175711 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1049179 | chr12:86056376-86799188 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
8 | nsv455680 | chr12:86120810-86160277 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | n/a | n/a | inside rSNPs | diseases |
9 | nsv559666 | chr12:86120810-86160277 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | n/a | n/a | inside rSNPs | diseases |
10 | esv2260070 | chr12:86153153-86153564 | Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:86152800-86153600 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr12:86153000-86153600 | Weak transcription | Duodenum Mucosa | Duodenum |
3 | chr12:86153000-86154600 | Enhancers | Fetal Intestine Small | intestine |
4 | chr12:86153400-86153600 | Flanking Bivalent TSS/Enh | Breast Myoepithelial Primary Cells | Breast |