Variant report
| Variant | rs1074677 |
|---|---|
| Chromosome Location | chr7:147318229-147318230 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10155864 | 0.86[YRI][hapmap] |
| rs10245518 | 0.84[AFR][1000 genomes] |
| rs10258277 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10260292 | 1.00[YRI][hapmap] |
| rs10269198 | 1.00[YRI][hapmap] |
| rs10275743 | 1.00[YRI][hapmap] |
| rs12537925 | 1.00[JPT][hapmap] |
| rs13438666 | 1.00[AMR][1000 genomes] |
| rs13438698 | 0.88[YRI][hapmap] |
| rs28366557 | 1.00[AMR][1000 genomes] |
| rs28375513 | 1.00[AMR][1000 genomes] |
| rs28599498 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
