Variant report

Variant	rs28599498
Chromosome Location	chr7:147336932-147336933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10258277	1.00[AMR][1000 genomes]
rs13438666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28366557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391808	1.00[AFR][1000 genomes]
rs28477379	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147333200-147338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:147335800-147337000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:147336000-147337000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:147336000-147337000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:147336200-147337000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:147336200-147337200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr7:147336200-147337600	Active TSS	Brain Angular Gyrus	brain
8	chr7:147336200-147337800	Active TSS	Brain Anterior Caudate	brain
9	chr7:147336200-147337800	Active TSS	Brain Cingulate Gyrus	brain
10	chr7:147336200-147338000	Active TSS	Brain Hippocampus Middle	brain
11	chr7:147336200-147338800	Active TSS	Brain Substantia Nigra	brain
12	chr7:147336400-147337000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:147336400-147337000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:147336400-147337200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:147336600-147337000	Enhancers	Fetal Brain Male	brain
16	chr7:147336600-147338200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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