Variant report

Variant	rs28477379
Chromosome Location	chr7:147338482-147338483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13438666	1.00[AFR][1000 genomes]
rs17170624	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28366557	1.00[AFR][1000 genomes]
rs28375513	1.00[AFR][1000 genomes]
rs28391808	1.00[AFR][1000 genomes]
rs28599498	1.00[AFR][1000 genomes]
rs57004198	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59914873	0.90[AMR][1000 genomes]
rs60539635	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6975479	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73470987	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73470989	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv516942	chr7:147337742-147354931	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv527018	chr7:147337742-147360817	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147336200-147338800	Active TSS	Brain Substantia Nigra	brain
2	chr7:147337000-147338600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:147338400-147338600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:147338400-147338600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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