Variant report

Variant	rs6975479
Chromosome Location	chr7:147333820-147333821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:147333671-147334010	HepG2	liver:	n/a	chr7:147333843-147333854
2	CEBPB	chr7:147333681-147333994	K562	blood:	n/a	chr7:147333843-147333854
3	CEBPB	chr7:147333682-147334036	A549	lung:	n/a	chr7:147333843-147333854
4	CEBPB	chr7:147333665-147334018	IMR90	lung:	n/a	chr7:147333843-147333854
5	CEBPB	chr7:147333699-147333955	H1-hESC	embryonic stem cell:	n/a	chr7:147333843-147333854

Variant related genes	Relation type
CNTNAP2	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10155857	1.00[JPT][hapmap]
rs10233594	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10243358	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10259590	1.00[JPT][hapmap]
rs10261888	1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10264653	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10269238	1.00[JPT][hapmap]
rs10269290	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10274421	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10274432	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10275470	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10276097	1.00[JPT][hapmap]
rs13437647	1.00[JPT][hapmap]
rs13438698	1.00[JPT][hapmap]
rs13438715	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17170624	1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860135	1.00[JPT][hapmap]
rs28477379	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2888495	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs57004198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58554793	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59914873	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60539635	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61449201	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73470987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73470989	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73741886	1.00[EUR][1000 genomes]
rs9886094	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9886242	1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147333200-147338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links