Variant report

Variant	rs10269290
Chromosome Location	chr7:147322240-147322241
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10155857	1.00[JPT][hapmap]
rs10233594	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10243358	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10251488	1.00[JPT][hapmap]
rs10259590	1.00[JPT][hapmap]
rs10261888	1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10264653	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10269238	1.00[JPT][hapmap]
rs10274421	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap]
rs10274432	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10275470	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10276097	1.00[JPT][hapmap]
rs13437647	1.00[JPT][hapmap]
rs13438698	1.00[JPT][hapmap]
rs13438715	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap]
rs17170624	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860135	1.00[JPT][hapmap]
rs1860136	1.00[JPT][hapmap]
rs28477379	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2888495	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs57004198	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58554793	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59914873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60539635	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61449201	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6975479	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73470987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73470989	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73741886	1.00[EUR][1000 genomes]
rs9886094	1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.85[YRI][hapmap]
rs9886242	1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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