Variant report
| Variant | rs10251488 |
|---|---|
| Chromosome Location | chr7:147317086-147317087 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10155857 | 1.00[JPT][hapmap] |
| rs10239776 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs10259590 | 1.00[JPT][hapmap] |
| rs10269290 | 1.00[JPT][hapmap] |
| rs10274421 | 1.00[JPT][hapmap] |
| rs10276658 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs10500187 | 1.00[CHB][hapmap] |
| rs1074676 | 0.90[YRI][hapmap] |
| rs11505677 | 0.92[CEU][hapmap];1.00[CHB][hapmap] |
| rs11764538 | 1.00[CHB][hapmap] |
| rs11772135 | 1.00[CHB][hapmap] |
| rs11773683 | 1.00[CHB][hapmap] |
| rs12703911 | 1.00[CHB][hapmap] |
| rs12703916 | 1.00[CHB][hapmap] |
| rs12703921 | 1.00[CHB][hapmap] |
| rs12703922 | 1.00[CHB][hapmap] |
| rs13221977 | 1.00[CHB][hapmap] |
| rs13235407 | 1.00[CHB][hapmap] |
| rs13235593 | 1.00[CHB][hapmap] |
| rs13438715 | 1.00[JPT][hapmap] |
| rs17170624 | 1.00[JPT][hapmap] |
| rs17170636 | 1.00[CHB][hapmap] |
| rs17223460 | 1.00[CHB][hapmap] |
| rs17224658 | 1.00[CHB][hapmap] |
| rs1860135 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1860136 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1990251 | 1.00[CHB][hapmap] |
| rs2046052 | 1.00[CHB][hapmap] |
| rs2373128 | 1.00[CHB][hapmap] |
| rs2373129 | 1.00[CHB][hapmap] |
| rs28432729 | 0.98[EUR][1000 genomes] |
| rs4272288 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes] |
| rs6947112 | 1.00[CHB][hapmap] |
| rs6955567 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs6977062 | 0.86[YRI][hapmap] |
| rs7788405 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7790896 | 0.84[YRI][hapmap] |
| rs9886094 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
