Variant report
| Variant | rs4272288 |
|---|---|
| Chromosome Location | chr7:147333967-147333968 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr7:147333671-147334010 | HepG2 | liver: | n/a | chr7:147333843-147333854 |
| 2 | CEBPB | chr7:147333681-147333994 | K562 | blood: | n/a | chr7:147333843-147333854 |
| 3 | CEBPB | chr7:147333682-147334036 | A549 | lung: | n/a | chr7:147333843-147333854 |
| 4 | CEBPB | chr7:147333665-147334018 | IMR90 | lung: | n/a | chr7:147333843-147333854 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CNTNAP2 | TF binding region |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10239776 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs10251488 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs10276658 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap] |
| rs11505677 | 0.84[CEU][hapmap];1.00[CHB][hapmap] |
| rs11764538 | 1.00[CHB][hapmap] |
| rs11772135 | 1.00[CHB][hapmap] |
| rs12703911 | 1.00[CHB][hapmap] |
| rs12703916 | 1.00[CHB][hapmap] |
| rs12703921 | 1.00[CHB][hapmap] |
| rs12703922 | 1.00[CHB][hapmap] |
| rs13221977 | 1.00[CHB][hapmap] |
| rs13235407 | 1.00[CHB][hapmap] |
| rs17170636 | 1.00[CHB][hapmap] |
| rs17223460 | 1.00[CHB][hapmap] |
| rs17224658 | 1.00[CHB][hapmap] |
| rs1860135 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs1860136 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs1990251 | 1.00[CHB][hapmap] |
| rs2046052 | 1.00[CHB][hapmap] |
| rs2373128 | 1.00[CHB][hapmap] |
| rs2373129 | 1.00[CHB][hapmap] |
| rs28432729 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6947112 | 1.00[CHB][hapmap] |
| rs6955567 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs7788405 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs995309 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4272288 | ZNF767 | cis | cerebellum | SCAN |
| rs4272288 | GIMAP7 | cis | cerebellum | SCAN |
| rs4272288 | ZNF425 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:147333200-147338400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
