Variant report
| Variant | rs17170636 |
|---|---|
| Chromosome Location | chr7:147361097-147361098 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:50)
| rs_ID | r2[population] |
|---|---|
| rs10239776 | 1.00[CHB][hapmap] |
| rs10251488 | 1.00[CHB][hapmap] |
| rs10276658 | 1.00[CHB][hapmap] |
| rs10500192 | 1.00[JPT][hapmap] |
| rs11505677 | 1.00[CHB][hapmap] |
| rs11772135 | 1.00[CHB][hapmap] |
| rs12530955 | 1.00[JPT][hapmap] |
| rs12531094 | 0.82[JPT][hapmap] |
| rs12531831 | 1.00[JPT][hapmap] |
| rs12532660 | 1.00[JPT][hapmap] |
| rs12534237 | 1.00[JPT][hapmap] |
| rs12536417 | 0.82[JPT][hapmap] |
| rs12536848 | 1.00[JPT][hapmap] |
| rs12538925 | 1.00[JPT][hapmap] |
| rs12539340 | 1.00[JPT][hapmap] |
| rs12540754 | 1.00[JPT][hapmap] |
| rs12540757 | 1.00[JPT][hapmap] |
| rs12703916 | 1.00[CHB][hapmap] |
| rs12703921 | 1.00[CHB][hapmap] |
| rs12703922 | 1.00[CHB][hapmap] |
| rs12703973 | 0.84[JPT][hapmap] |
| rs13235407 | 1.00[CHB][hapmap] |
| rs1525252 | 1.00[JPT][hapmap] |
| rs1525260 | 1.00[JPT][hapmap] |
| rs1525261 | 1.00[JPT][hapmap] |
| rs1525262 | 1.00[JPT][hapmap] |
| rs1525263 | 1.00[JPT][hapmap] |
| rs1638048 | 1.00[JPT][hapmap] |
| rs17170668 | 1.00[JPT][hapmap] |
| rs17223460 | 1.00[CHB][hapmap] |
| rs17224658 | 1.00[CHB][hapmap] |
| rs17226520 | 0.85[JPT][hapmap] |
| rs17508203 | 1.00[JPT][hapmap] |
| rs1860135 | 1.00[CHB][hapmap] |
| rs1990251 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2373179 | 1.00[JPT][hapmap] |
| rs28407127 | 0.94[ASN][1000 genomes] |
| rs4272288 | 1.00[CHB][hapmap] |
| rs6947112 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6955567 | 1.00[CHB][hapmap] |
| rs73472810 | 0.89[ASN][1000 genomes] |
| rs73472812 | 0.89[ASN][1000 genomes] |
| rs73744519 | 0.94[ASN][1000 genomes] |
| rs7457261 | 1.00[JPT][hapmap] |
| rs7788405 | 1.00[CHB][hapmap] |
| rs851683 | 1.00[JPT][hapmap] |
| rs851685 | 0.85[JPT][hapmap] |
| rs851731 | 0.89[ASN][1000 genomes] |
| rs851735 | 1.00[JPT][hapmap] |
| rs954113 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:147360600-147361400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr7:147360600-147361400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
