Variant report

Variant	rs73744519
Chromosome Location	chr7:147356104-147356105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17170636	0.94[ASN][1000 genomes]
rs1990251	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28407127	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947112	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73472810	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73472812	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73472817	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs851731	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv527018	chr7:147337742-147360817	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147355400-147356200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147355400-147357200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:147355400-147357400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:147355600-147356400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:147355600-147356400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:147355600-147356400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:147355600-147357200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:147355600-147357400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:147355600-147357800	Enhancers	Fetal Lung	lung
10	chr7:147355800-147356200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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