Variant report

Variant	rs17226520
Chromosome Location	chr7:147498340-147498341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10230498	1.00[CHB][hapmap]
rs10262422	1.00[CHB][hapmap]
rs10271321	1.00[CHB][hapmap]
rs10500191	1.00[CHB][hapmap]
rs10500192	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12530803	0.87[CHD][hapmap]
rs12530955	0.82[JPT][hapmap]
rs12531773	1.00[CHD][hapmap]
rs12531831	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs12532660	0.85[JPT][hapmap]
rs12534237	0.85[JPT][hapmap]
rs12536848	0.85[JPT][hapmap]
rs12538925	0.85[JPT][hapmap]
rs12539340	0.85[JPT][hapmap]
rs12539579	1.00[CHD][hapmap]
rs12540754	0.85[JPT][hapmap]
rs12540757	0.85[JPT][hapmap]
rs12703973	0.84[JPT][hapmap]
rs1525252	0.85[JPT][hapmap]
rs1525260	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs1525261	0.85[JPT][hapmap]
rs1525262	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs1525263	0.85[JPT][hapmap]
rs1525268	1.00[CHB][hapmap]
rs1638048	0.85[JPT][hapmap]
rs17170636	0.85[JPT][hapmap]
rs17170668	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs17226275	1.00[CHB][hapmap]
rs17417154	1.00[CHB][hapmap]
rs17417231	1.00[CHB][hapmap]
rs17508203	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17508434	1.00[CHB][hapmap]
rs17824362	1.00[CHB][hapmap];0.97[GIH][hapmap]
rs17824644	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap]
rs17824874	0.80[GIH][hapmap]
rs17824941	1.00[CHB][hapmap];0.91[GIH][hapmap]
rs1990251	0.85[JPT][hapmap]
rs2140811	1.00[CHB][hapmap]
rs2373179	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2373180	1.00[CHB][hapmap]
rs2373182	1.00[CHB][hapmap]
rs2373183	1.00[CHB][hapmap]
rs4392814	1.00[CHB][hapmap]
rs4632977	1.00[CHB][hapmap]
rs6947112	0.85[JPT][hapmap]
rs7457261	0.85[JPT][hapmap]
rs851663	0.80[GIH][hapmap]
rs851683	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs851689	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs851735	0.85[JPT][hapmap]
rs954113	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147494600-147506200	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147496000-147500200	Weak transcription	Fetal Lung	lung

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