Variant report

Variant	rs2373180
Chromosome Location	chr7:147441470-147441471
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1012086	1.00[ASN][1000 genomes]
rs10229178	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10230498	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10262422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271321	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10500191	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10500192	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10952708	0.95[EUR][1000 genomes]
rs10952711	0.94[CEU][hapmap]
rs1101041	0.96[EUR][1000 genomes]
rs11766799	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12666318	0.94[CEU][hapmap]
rs1357902	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525268	1.00[CHB][hapmap]
rs17226275	1.00[CHB][hapmap]
rs17226520	1.00[CHB][hapmap]
rs17417154	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17417231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17508203	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17508434	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17823834	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17824362	1.00[CHB][hapmap]
rs17824644	1.00[CHB][hapmap]
rs17824941	1.00[CHB][hapmap]
rs2049469	0.90[CEU][hapmap]
rs2140811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2373179	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs2373182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2373183	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs2888516	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs4392814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4632977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6953679	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs6955939	0.94[CEU][hapmap]
rs6961273	0.95[EUR][1000 genomes]
rs6965796	0.94[EUR][1000 genomes]
rs7791979	0.94[CEU][hapmap]
rs851649	0.85[CEU][hapmap]
rs851653	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs851654	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs954112	0.94[CEU][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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