Variant report

Variant	rs10229178
Chromosome Location	chr7:147457442-147457443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10230498	0.88[CEU][hapmap]
rs10231699	0.83[YRI][hapmap]
rs10262422	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10265558	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10271321	0.88[CEU][hapmap]
rs10500191	0.94[CEU][hapmap]
rs10500192	1.00[CEU][hapmap]
rs10952708	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10952711	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10952713	0.91[ASN][1000 genomes]
rs1101041	0.99[EUR][1000 genomes]
rs1106439	1.00[CHB][hapmap]
rs11766799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs11971275	0.91[ASN][1000 genomes]
rs12539452	0.91[ASN][1000 genomes]
rs12666318	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs12703973	1.00[CHB][hapmap]
rs1357902	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1467331	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs17417154	1.00[CEU][hapmap]
rs17417231	1.00[CEU][hapmap]
rs17508203	1.00[CEU][hapmap]
rs17508434	1.00[CEU][hapmap]
rs17823834	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2049468	0.81[AFR][1000 genomes]
rs2049469	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2140811	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2373179	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs2373180	1.00[CEU][hapmap]
rs2373182	1.00[CEU][hapmap]
rs2373183	0.93[CEU][hapmap]
rs2888516	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4392814	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4632977	1.00[CEU][hapmap]
rs4726890	0.91[ASN][1000 genomes]
rs6953679	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6955939	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs6961273	0.93[EUR][1000 genomes]
rs6965796	0.93[EUR][1000 genomes]
rs724440	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs73458209	0.91[ASN][1000 genomes]
rs73458234	0.91[ASN][1000 genomes]
rs73472857	0.91[ASN][1000 genomes]
rs7791979	0.93[CEU][hapmap]
rs7799600	0.83[YRI][hapmap]
rs7809690	0.91[ASN][1000 genomes]
rs851649	0.84[CEU][hapmap]
rs851653	0.93[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs851654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs954112	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:147456200-147457600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:147456800-147458800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:147456800-147459200	Weak transcription	Brain Hippocampus Middle	brain

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