Variant report

Variant	rs10265558
Chromosome Location	chr7:147454638-147454639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10085579	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155998	0.88[JPT][hapmap]
rs10225143	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10229178	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10231699	0.80[YRI][hapmap]
rs10262422	0.93[YRI][hapmap]
rs10265547	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500192	0.85[MEX][hapmap]
rs10952709	0.88[JPT][hapmap]
rs10952711	0.86[JPT][hapmap]
rs1101041	0.81[AMR][1000 genomes]
rs1106439	0.88[JPT][hapmap]
rs12703972	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12703973	0.86[JPT][hapmap]
rs13236705	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1467331	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1525259	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs2049468	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049469	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs2140812	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2204415	0.91[CEU][hapmap]
rs4142924	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725746	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464838	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs6955939	0.88[JPT][hapmap]
rs6961273	0.81[AMR][1000 genomes]
rs724440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785603	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7791979	0.88[JPT][hapmap];0.85[MEX][hapmap]
rs7799600	0.80[YRI][hapmap]
rs851650	0.87[CEU][hapmap]
rs851651	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs851652	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs851653	0.88[JPT][hapmap];0.85[MEX][hapmap]
rs851654	0.88[JPT][hapmap];0.95[MEX][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs851655	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851656	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851674	0.91[GIH][hapmap]
rs851681	0.91[GIH][hapmap]
rs9986848	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10265558	ZNF212	cis	parietal	SCAN
rs10265558	CHPF2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453600-147454800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
4	chr7:147454200-147456400	Weak transcription	Brain Hippocampus Middle	brain

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