Variant report

Variant	rs4725746
Chromosome Location	chr7:147440646-147440647
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10085579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155998	0.88[JPT][hapmap]
rs10225143	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10265547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265558	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952709	0.88[JPT][hapmap]
rs10952711	0.86[JPT][hapmap]
rs1101041	0.83[AMR][1000 genomes]
rs1106439	0.88[JPT][hapmap]
rs11766799	0.85[AMR][1000 genomes]
rs12703972	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12703973	0.86[JPT][hapmap]
rs13236705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1467331	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs1525259	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2049468	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140812	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs2204415	0.96[CEU][hapmap]
rs2373179	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4142924	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464838	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs6955939	0.88[JPT][hapmap]
rs6961273	0.81[AMR][1000 genomes]
rs724440	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785603	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7791979	0.88[JPT][hapmap]
rs851650	0.88[CEU][hapmap]
rs851651	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs851652	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs851653	0.88[JPT][hapmap];0.82[AMR][1000 genomes]
rs851654	0.88[JPT][hapmap]
rs851655	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851656	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9986848	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4725746	AC005229.1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147439200-147440800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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