Variant report

Variant	rs7785603
Chromosome Location	chr7:147454562-147454563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10085579	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10155998	0.88[JPT][hapmap]
rs10225143	0.88[JPT][hapmap]
rs10231699	0.93[YRI][hapmap]
rs10245935	0.87[YRI][hapmap]
rs10265547	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10265558	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10274524	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10280155	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10952709	0.88[JPT][hapmap]
rs10952710	0.84[YRI][hapmap]
rs10952711	0.86[JPT][hapmap]
rs10952712	0.84[YRI][hapmap]
rs10952713	0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs1106439	0.88[JPT][hapmap]
rs11765619	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11769191	0.81[CEU][hapmap]
rs1177004	0.82[CEU][hapmap]
rs12056208	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12112564	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12113689	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12155395	0.86[YRI][hapmap]
rs12539452	0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs12703960	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12703972	1.00[JPT][hapmap]
rs12703973	0.86[JPT][hapmap]
rs13236705	1.00[JPT][hapmap]
rs1404731	0.81[CEU][hapmap]
rs1404733	0.83[CEU][hapmap]
rs1525259	1.00[JPT][hapmap]
rs16883690	0.93[YRI][hapmap]
rs1917617	1.00[CHB][hapmap]
rs2049468	0.96[ASN][1000 genomes]
rs34645698	0.89[EUR][1000 genomes]
rs4142924	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4725746	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs58676850	0.89[EUR][1000 genomes]
rs6464838	1.00[CHB][hapmap]
rs6955939	0.88[JPT][hapmap]
rs724440	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs73475064	1.00[EUR][1000 genomes]
rs73475065	1.00[EUR][1000 genomes]
rs7791979	0.88[JPT][hapmap]
rs7799600	0.93[YRI][hapmap]
rs7800200	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs7805083	0.81[CEU][hapmap]
rs7807589	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs851651	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851652	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851653	0.88[JPT][hapmap]
rs851654	0.88[JPT][hapmap]
rs851655	0.94[ASN][1000 genomes]
rs851656	0.94[ASN][1000 genomes]
rs851698	0.91[CEU][hapmap]
rs9640245	1.00[CEU][hapmap]
rs9986848	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453600-147454800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
4	chr7:147454200-147456400	Weak transcription	Brain Hippocampus Middle	brain

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