Variant report

Variant	rs10245935
Chromosome Location	chr7:147444502-147444503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10155998	1.00[CHB][hapmap]
rs10156108	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10229178	0.91[ASN][1000 genomes]
rs10231699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10253551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10259955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10952708	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs10952709	1.00[CHB][hapmap]
rs10952710	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10952713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11971275	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12155395	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12531829	1.00[EUR][1000 genomes]
rs12531831	1.00[EUR][1000 genomes]
rs12532190	1.00[EUR][1000 genomes]
rs12532660	1.00[EUR][1000 genomes]
rs12534449	1.00[EUR][1000 genomes]
rs12536848	1.00[EUR][1000 genomes]
rs12538275	1.00[EUR][1000 genomes]
rs12539452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666318	1.00[CHB][hapmap]
rs1525252	1.00[EUR][1000 genomes]
rs1525265	1.00[EUR][1000 genomes]
rs1525266	1.00[EUR][1000 genomes]
rs16883690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2049469	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2888516	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4726890	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6953679	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs73458209	1.00[ASN][1000 genomes]
rs73458234	1.00[ASN][1000 genomes]
rs73472857	1.00[ASN][1000 genomes]
rs7457261	1.00[EUR][1000 genomes]
rs7785603	0.87[YRI][hapmap]
rs7799600	1.00[CHB][hapmap];0.96[YRI][hapmap]
rs7807589	0.81[YRI][hapmap]
rs7809690	1.00[ASN][1000 genomes]
rs954112	1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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