Variant report

Variant	rs12538275
Chromosome Location	chr7:147477024-147477025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10156108	1.00[EUR][1000 genomes]
rs10952713	1.00[EUR][1000 genomes]
rs12530955	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12530977	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531829	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531831	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532190	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532660	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532724	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533614	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12534449	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535317	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535323	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536848	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538925	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12539340	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12539452	1.00[EUR][1000 genomes]
rs12540410	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540754	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540757	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525252	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525264	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525265	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525266	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170655	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2373179	0.89[ASN][1000 genomes]
rs58710526	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7457261	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954113	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147473400-147478000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147473800-147477800	Weak transcription	Brain Hippocampus Middle	brain

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