Variant report

Variant	rs1525264
Chromosome Location	chr7:147471183-147471184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12530955	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12530977	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531829	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531831	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532190	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532660	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532724	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533614	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12534449	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535317	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535323	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536848	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12538275	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12538925	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12539340	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540410	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540754	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540757	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525252	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525265	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525266	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17170655	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2373179	0.89[ASN][1000 genomes]
rs58710526	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7457261	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs954113	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147461200-147472800	Weak transcription	Brain Angular Gyrus	brain
2	chr7:147468800-147472600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:147468800-147472600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:147468800-147473000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:147470000-147472600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:147470400-147471800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:147471000-147471400	Active TSS	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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