Variant report

Variant	rs12539340
Chromosome Location	chr7:147456566-147456567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10500192	1.00[JPT][hapmap]
rs12530955	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12530977	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531094	0.82[JPT][hapmap]
rs12531829	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531831	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532190	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532660	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532724	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533614	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12534237	1.00[JPT][hapmap]
rs12534449	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535317	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535323	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536417	0.82[JPT][hapmap]
rs12536848	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12538275	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12538925	1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540410	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540754	1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540757	1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12703973	0.84[JPT][hapmap]
rs1525252	1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525260	1.00[JPT][hapmap]
rs1525261	1.00[JPT][hapmap]
rs1525262	1.00[JPT][hapmap]
rs1525263	1.00[JPT][hapmap]
rs1525264	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525265	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525266	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1638048	1.00[JPT][hapmap]
rs17170636	1.00[JPT][hapmap]
rs17170655	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17170668	1.00[JPT][hapmap]
rs17226520	0.85[JPT][hapmap]
rs17508203	1.00[JPT][hapmap]
rs1990251	1.00[JPT][hapmap]
rs2373179	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs58710526	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6947112	1.00[JPT][hapmap]
rs7457261	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs851683	1.00[JPT][hapmap]
rs851685	0.85[JPT][hapmap]
rs851735	1.00[JPT][hapmap]
rs954113	1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:147456200-147457600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:147456400-147456800	Enhancers	Brain Hippocampus Middle	brain

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