Variant report

Variant	rs12703973
Chromosome Location	chr7:147448663-147448664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147446008..147448178-chr7:147448478..147451242,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10085579	0.86[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes]
rs10155998	1.00[JPT][hapmap]
rs10156108	0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs10229178	1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs10262422	0.97[EUR][1000 genomes]
rs10265547	0.86[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes]
rs10265558	0.86[JPT][hapmap]
rs10500192	0.84[JPT][hapmap]
rs10952708	0.96[EUR][1000 genomes]
rs10952709	1.00[JPT][hapmap]
rs10952711	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1101041	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1106439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11766799	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530955	0.82[JPT][hapmap]
rs12531831	0.84[JPT][hapmap]
rs12532660	0.84[JPT][hapmap]
rs12534237	0.84[JPT][hapmap]
rs12536848	0.84[JPT][hapmap]
rs12538925	0.84[JPT][hapmap]
rs12539340	0.84[JPT][hapmap]
rs12540754	0.84[JPT][hapmap]
rs12540757	0.84[JPT][hapmap]
rs12666318	1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap]
rs12703972	0.86[JPT][hapmap];0.95[YRI][hapmap]
rs13236705	0.86[JPT][hapmap];0.95[YRI][hapmap]
rs1357902	0.96[EUR][1000 genomes]
rs1525252	0.84[JPT][hapmap]
rs1525259	0.86[JPT][hapmap];0.94[YRI][hapmap]
rs1525260	0.84[JPT][hapmap]
rs1525261	0.84[JPT][hapmap]
rs1525262	0.84[JPT][hapmap]
rs1525263	0.84[JPT][hapmap]
rs1638048	0.84[JPT][hapmap]
rs17170636	0.84[JPT][hapmap]
rs17170668	0.84[JPT][hapmap]
rs17226520	0.84[JPT][hapmap]
rs17508203	0.82[JPT][hapmap]
rs17823834	0.95[EUR][1000 genomes]
rs1990251	0.84[JPT][hapmap]
rs2049469	1.00[CHB][hapmap]
rs2140811	0.97[EUR][1000 genomes]
rs2373179	0.84[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2888516	1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs4142924	0.86[JPT][hapmap]
rs4392814	0.97[EUR][1000 genomes]
rs4725746	0.86[JPT][hapmap];0.83[AMR][1000 genomes]
rs6947112	0.84[JPT][hapmap]
rs6953679	1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs6955939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6961273	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6965796	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs700319	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs700320	1.00[YRI][hapmap]
rs724440	0.86[JPT][hapmap]
rs7457261	0.84[JPT][hapmap]
rs7785603	0.86[JPT][hapmap]
rs7791979	1.00[JPT][hapmap]
rs851649	0.87[YRI][hapmap]
rs851650	0.91[YRI][hapmap]
rs851651	0.84[JPT][hapmap]
rs851652	0.82[JPT][hapmap]
rs851653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851654	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851655	0.83[AMR][1000 genomes]
rs851656	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs851674	1.00[YRI][hapmap]
rs851681	0.85[YRI][hapmap]
rs851683	0.84[JPT][hapmap]
rs851685	0.84[JPT][hapmap]
rs851735	0.84[JPT][hapmap]
rs954112	1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs954113	0.84[JPT][hapmap]
rs9986848	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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