Variant report

Variant	rs4142924
Chromosome Location	chr7:147422076-147422077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085579	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10155998	0.88[JPT][hapmap]
rs10225143	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10265547	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10265558	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10952709	0.88[JPT][hapmap]
rs10952711	0.86[JPT][hapmap]
rs1106439	0.88[JPT][hapmap]
rs12703972	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12703973	0.86[JPT][hapmap]
rs13236705	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1467331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs1525259	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2049468	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2140812	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs2204415	0.95[CEU][hapmap]
rs4725746	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464838	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6955939	0.88[JPT][hapmap]
rs724440	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7785603	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7791979	0.88[JPT][hapmap]
rs851650	0.91[CEU][hapmap]
rs851651	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs851652	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs851653	0.88[JPT][hapmap]
rs851654	0.88[JPT][hapmap]
rs851655	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs851656	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs851674	0.82[GIH][hapmap]
rs851681	0.82[GIH][hapmap]
rs9986848	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4142924	CHPF2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147421200-147422200	Enhancers	Brain Anterior Caudate	brain
2	chr7:147421600-147422200	Enhancers	Brain Angular Gyrus	brain
3	chr7:147421800-147422400	Enhancers	Brain Substantia Nigra	brain

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