Variant report

Variant	rs1467331
Chromosome Location	chr7:147453811-147453812
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10085579	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs10225143	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs10229178	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs10231699	0.80[YRI][hapmap]
rs10262422	0.93[YRI][hapmap]
rs10265547	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs10265558	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10274524	1.00[JPT][hapmap]
rs10280155	0.95[ASN][1000 genomes]
rs12056208	1.00[JPT][hapmap]
rs12112564	1.00[JPT][hapmap]
rs12113689	1.00[JPT][hapmap]
rs12703960	1.00[JPT][hapmap]
rs12703972	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs13236705	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs1525259	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs2049468	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2049469	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs2140812	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2204415	0.96[CEU][hapmap]
rs34645698	0.87[ASN][1000 genomes]
rs4142924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs4725746	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs58676850	0.87[ASN][1000 genomes]
rs6464838	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs724440	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs73475064	0.95[ASN][1000 genomes]
rs73475065	0.95[ASN][1000 genomes]
rs7799600	0.80[YRI][hapmap]
rs7800200	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7807589	1.00[JPT][hapmap]
rs851650	0.88[CEU][hapmap]
rs851654	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs851655	0.97[EUR][1000 genomes]
rs851656	0.96[EUR][1000 genomes]
rs9986848	0.87[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147452800-147454200	Enhancers	Brain Hippocampus Middle	brain
2	chr7:147453400-147454200	Enhancers	Fetal Lung	lung
3	chr7:147453600-147454800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
5	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain

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