Variant report

Variant	rs2049469
Chromosome Location	chr7:147452827-147452828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10229178	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10231699	1.00[JPT][hapmap]
rs10245935	1.00[JPT][hapmap]
rs10253551	1.00[JPT][hapmap]
rs10259955	1.00[JPT][hapmap]
rs10262422	0.89[CEU][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs10265558	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs10500191	0.84[CEU][hapmap]
rs10500192	0.88[CEU][hapmap]
rs10952708	0.91[ASN][1000 genomes]
rs10952710	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10952711	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10952712	0.81[YRI][hapmap]
rs10952713	1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs1101041	0.80[EUR][1000 genomes]
rs1106439	1.00[CHB][hapmap]
rs11766799	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11971275	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12155395	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs12539452	1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs12666318	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs12703973	1.00[CHB][hapmap]
rs1357902	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs1467331	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs16883690	1.00[JPT][hapmap]
rs17417154	0.88[CEU][hapmap]
rs17417231	0.88[CEU][hapmap]
rs17508203	0.90[CEU][hapmap]
rs17508434	0.90[CEU][hapmap]
rs17823834	0.88[CEU][hapmap]
rs2049468	0.84[AFR][1000 genomes]
rs2140811	0.88[CEU][hapmap]
rs2373180	0.90[CEU][hapmap]
rs2373182	0.90[CEU][hapmap]
rs2373183	0.83[CEU][hapmap]
rs2888516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4392814	0.88[CEU][hapmap]
rs4632977	0.90[CEU][hapmap]
rs4726890	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6953679	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6955939	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs724440	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs73458209	0.87[ASN][1000 genomes]
rs73458234	0.87[ASN][1000 genomes]
rs73472857	0.87[ASN][1000 genomes]
rs7791979	0.82[CEU][hapmap]
rs7809690	0.87[ASN][1000 genomes]
rs851649	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs851652	0.80[YRI][hapmap]
rs851653	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs851654	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs954112	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147451800-147453600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:147452800-147454200	Enhancers	Brain Hippocampus Middle	brain

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