Variant report

Variant	rs10262422
Chromosome Location	chr7:147454655-147454656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1012086	1.00[ASN][1000 genomes]
rs10229178	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10230498	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10265558	0.93[YRI][hapmap]
rs10271321	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10500191	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10500192	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10952708	0.93[EUR][1000 genomes]
rs10952711	0.94[CEU][hapmap]
rs1101041	0.98[EUR][1000 genomes]
rs11766799	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12666318	0.94[CEU][hapmap]
rs1357902	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467331	0.93[YRI][hapmap]
rs1525268	1.00[CHB][hapmap]
rs17226275	1.00[CHB][hapmap]
rs17226520	1.00[CHB][hapmap]
rs17417154	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17417231	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17508203	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17508434	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17823834	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17824362	1.00[CHB][hapmap]
rs17824644	1.00[CHB][hapmap]
rs17824941	1.00[CHB][hapmap]
rs2049469	0.89[CEU][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs2140811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs2373179	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs2373180	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2373182	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2373183	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs2888516	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs4392814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs4632977	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6953679	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6955939	0.94[CEU][hapmap]
rs6961273	0.93[EUR][1000 genomes]
rs6965796	0.92[EUR][1000 genomes]
rs724440	0.93[YRI][hapmap]
rs7791979	0.94[CEU][hapmap]
rs851649	0.84[CEU][hapmap]
rs851653	0.94[CEU][hapmap];0.98[EUR][1000 genomes]
rs851654	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs954112	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453600-147454800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
4	chr7:147454200-147456400	Weak transcription	Brain Hippocampus Middle	brain

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