Variant report

Variant	rs851649
Chromosome Location	chr7:147460718-147460719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10229178	0.84[CEU][hapmap]
rs10262422	0.84[CEU][hapmap]
rs10500191	0.90[CEU][hapmap]
rs10500192	0.88[CEU][hapmap]
rs10952711	0.90[CEU][hapmap];0.87[YRI][hapmap]
rs1101041	0.82[AFR][1000 genomes]
rs11423657	0.81[ASN][1000 genomes]
rs11766799	0.84[CEU][hapmap];0.87[YRI][hapmap]
rs12666318	0.90[CEU][hapmap]
rs12703972	0.83[YRI][hapmap]
rs12703973	0.87[YRI][hapmap]
rs13236705	0.83[YRI][hapmap]
rs1357902	0.84[CEU][hapmap]
rs1525259	0.82[YRI][hapmap]
rs17417154	0.88[CEU][hapmap]
rs17417231	0.88[CEU][hapmap]
rs17508203	0.85[CEU][hapmap]
rs17508434	0.85[CEU][hapmap]
rs17823834	0.83[CEU][hapmap]
rs2049469	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs2140811	0.88[CEU][hapmap]
rs2373179	0.80[CEU][hapmap];0.83[YRI][hapmap]
rs2373180	0.85[CEU][hapmap]
rs2373182	0.85[CEU][hapmap]
rs2888516	0.88[CEU][hapmap]
rs4392814	0.88[CEU][hapmap]
rs4632977	0.85[CEU][hapmap]
rs6953679	0.94[CEU][hapmap]
rs6955939	0.90[CEU][hapmap];0.83[YRI][hapmap]
rs700319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs700320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7791979	0.82[CEU][hapmap]
rs851650	0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs851653	0.94[CEU][hapmap];0.81[YRI][hapmap]
rs851654	0.88[CEU][hapmap]
rs851674	0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs851679	0.94[JPT][hapmap]
rs851681	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs954112	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147459200-147461200	Enhancers	Brain Hippocampus Middle	brain
2	chr7:147460600-147461200	Enhancers	Brain Angular Gyrus	brain
3	chr7:147460600-147461200	Enhancers	Brain Cingulate Gyrus	brain
4	chr7:147460600-147461200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr7:147460600-147461600	Enhancers	Brain Substantia Nigra	brain

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